Variant report

Variant	rs11208901
Chromosome Location	chr1:67004635-67004636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10493408	0.92[ASN][1000 genomes]
rs10493411	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11208896	0.92[ASN][1000 genomes]
rs11208898	0.91[ASN][1000 genomes]
rs11208900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208902	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12022565	0.92[ASN][1000 genomes]
rs12025668	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12040232	0.92[ASN][1000 genomes]
rs12043594	0.92[ASN][1000 genomes]
rs12046904	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12048885	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12565798	0.85[EUR][1000 genomes]
rs12567898	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12568801	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1338196	0.92[ASN][1000 genomes]
rs1338199	0.92[ASN][1000 genomes]
rs1338201	0.91[ASN][1000 genomes]
rs1338202	0.92[ASN][1000 genomes]
rs1338203	0.92[ASN][1000 genomes]
rs1338206	0.92[ASN][1000 genomes]
rs1338207	0.83[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs1445578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1445579	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129039	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129041	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129043	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129065	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3795531	0.81[EUR][1000 genomes]
rs4655614	0.92[ASN][1000 genomes]
rs4655616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57941297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6664942	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs6665299	0.92[ASN][1000 genomes]
rs6689119	0.83[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs6689313	0.81[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs6693644	0.92[ASN][1000 genomes]
rs6697068	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6699123	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699568	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72916320	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72934129	0.92[ASN][1000 genomes]
rs72934131	0.92[ASN][1000 genomes]
rs72934142	0.92[ASN][1000 genomes]
rs72934143	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72934153	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7519639	0.83[EUR][1000 genomes]
rs7532400	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532598	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532613	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533806	0.92[ASN][1000 genomes]
rs7533837	0.92[ASN][1000 genomes]
rs7544247	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544505	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549881	0.92[ASN][1000 genomes]
rs967324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000000-67004800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:67000000-67005000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:67000000-67005400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:67000200-67006400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:67000400-67005000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:67000400-67005200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:67000400-67008000	Weak transcription	Lung	lung
8	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:67001000-67006200	Weak transcription	HepG2	liver
11	chr1:67001000-67008000	Weak transcription	Left Ventricle	heart
12	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
13	chr1:67001400-67005400	Weak transcription	Fetal Lung	lung
14	chr1:67001600-67011000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:67001800-67006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:67002000-67005600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:67002000-67010600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:67002200-67006400	Weak transcription	Osteobl	bone
19	chr1:67002600-67006000	Weak transcription	HUVEC	blood vessel
20	chr1:67002600-67006400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:67002800-67004800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr1:67002800-67004800	Weak transcription	Brain Substantia Nigra	brain
23	chr1:67002800-67005000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:67002800-67005200	Weak transcription	NH-A	brain
25	chr1:67002800-67008200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:67003000-67004800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:67003000-67006200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
29	chr1:67003200-67005400	Weak transcription	Fetal Brain Female	brain
30	chr1:67003600-67004800	Weak transcription	Aorta	Aorta
31	chr1:67003600-67005000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:67003800-67005000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:67003800-67008000	Enhancers	Brain Anterior Caudate	brain
34	chr1:67004200-67004800	Enhancers	Fetal Brain Male	brain
35	chr1:67004200-67009200	Enhancers	Brain Cingulate Gyrus	brain
36	chr1:67004200-67009600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
38	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
39	chr1:67004400-67004800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:67004400-67005000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:67004400-67005000	Enhancers	Brain Angular Gyrus	brain
42	chr1:67004400-67005400	Enhancers	NHLF	lung
43	chr1:67004400-67006600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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