Variant report

Variant	rs72934153
Chromosome Location	chr1:66998785-66998786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:66996735-67003737	IMR90	lung:	n/a	n/a
2	CREB1	chr1:66998513-66999082	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIN3A	chr1:66998414-66999956	H1-hESC	embryonic stem cell:	n/a	n/a
4	TBP	chr1:66998636-66999302	H1-hESC	embryonic stem cell:	n/a	n/a
5	CEBPB	chr1:66998429-66998812	IMR90	lung:	n/a	n/a
6	CTCF	chr1:66998720-66998870	AG04449	skin:	n/a	chr1:66998825-66998834
7	POLR2A	chr1:66998766-66998838	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr1:66997970-67000478	HUVEC	blood vessel:	n/a	n/a
9	CREB1	chr1:66998542-66999928	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAZ	chr1:66997994-67000458	IMR90	lung:	n/a	chr1:66998876-66998886
11	POLR2A	chr1:66997967-67000176	HUVEC	blood vessel:	n/a	n/a
12	TAF1	chr1:66998546-66998840	H1-hESC	embryonic stem cell:	n/a	n/a
13	MXI1	chr1:66998034-67001342	IMR90	lung:	n/a	n/a
14	CHD1	chr1:66997255-67003973	IMR90	lung:	n/a	n/a
15	MXI1	chr1:66998605-67002231	SK-N-SH	brain:	n/a	n/a
16	CTCF	chr1:66998760-66998910	HUVEC	blood vessel:	n/a	chr1:66998825-66998834
17	MAX	chr1:66998746-66999087	H1-hESC	embryonic stem cell:	n/a	chr1:66998876-66998886
18	ZNF143	chr1:66998752-66999855	H1-hESC	embryonic stem cell:	n/a	chr1:66999002-66999020 chr1:66999257-66999276
19	CHD2	chr1:66998680-66999120	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr1:66998676-67000418	H1-neurons	neurons:	n/a	n/a
21	POLR2A	chr1:66998611-67000458	H1-neurons	neurons:	n/a	n/a
22	CTBP2	chr1:66998482-66999243	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr1:66998768-66999104	HUVEC	blood vessel:	n/a	n/a
24	REST	chr1:66998238-67000810	H1-neurons	neurons:	n/a	chr1:67000267-67000275 chr1:66999795-66999808 chr1:66999795-66999808 chr1:66999795-66999808 chr1:67000301-67000311

Variant related genes	Relation type
SGIP1	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10493408	0.84[ASN][1000 genomes]
rs11208896	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11208898	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11208900	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11208901	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11208902	0.91[ASN][1000 genomes]
rs12022565	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12025668	0.82[EUR][1000 genomes]
rs12040232	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12043594	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12046904	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12048885	0.82[EUR][1000 genomes]
rs12567898	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12568801	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1338196	0.83[ASN][1000 genomes]
rs1338199	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1338201	0.83[ASN][1000 genomes]
rs1338202	0.84[ASN][1000 genomes]
rs1338203	0.84[ASN][1000 genomes]
rs1338206	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1338207	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1445578	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1445579	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17129039	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129041	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129043	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129062	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17129064	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17129065	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4655614	0.84[ASN][1000 genomes]
rs4655616	0.91[ASN][1000 genomes]
rs57941297	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6664942	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6665299	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6689119	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6689313	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6693644	0.84[ASN][1000 genomes]
rs6697068	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6699123	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6699568	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72916320	0.82[EUR][1000 genomes]
rs72934129	0.84[ASN][1000 genomes]
rs72934131	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72934142	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72934143	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532400	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7532598	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7532613	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533806	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7533837	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7544247	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7544505	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7549881	0.84[ASN][1000 genomes]
rs967324	0.90[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66998000-66999000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:66998200-66998800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:66998200-66998800	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr1:66998200-66998800	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr1:66998200-66998800	Flanking Active TSS	NHDF-Ad	bronchial
6	chr1:66998200-66998800	Flanking Active TSS	NHLF	lung
7	chr1:66998200-66998800	Flanking Active TSS	Osteobl	bone
8	chr1:66998200-66999000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:66998200-66999000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:66998200-66999000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:66998200-66999000	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr1:66998200-66999200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
13	chr1:66998200-66999200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr1:66998200-66999400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr1:66998200-67000200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr1:66998200-67000200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr1:66998200-67000400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:66998200-67000400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:66998200-67000400	Flanking Active TSS	HUVEC	blood vessel
20	chr1:66998200-67001000	Active TSS	Fetal Brain Female	brain
21	chr1:66998400-66998800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:66998400-66998800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:66998400-66998800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
24	chr1:66998400-66998800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
25	chr1:66998400-66998800	Flanking Active TSS	Brain Angular Gyrus	brain
26	chr1:66998400-66998800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr1:66998400-66998800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:66998400-66998800	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr1:66998400-66998800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
30	chr1:66998400-66998800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
31	chr1:66998400-66998800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr1:66998400-66998800	Flanking Active TSS	Rectal Smooth Muscle	rectum
33	chr1:66998400-66999000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr1:66998400-66999000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:66998400-66999000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr1:66998400-66999000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr1:66998400-66999000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr1:66998400-66999000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:66998400-66999000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr1:66998400-66999000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:66998400-66999000	Flanking Active TSS	Thymus	Thymus
42	chr1:66998400-66999000	Flanking Active TSS	NHEK	skin
43	chr1:66998400-66999200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
44	chr1:66998400-66999200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:66998400-66999200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:66998400-66999200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr1:66998400-66999200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr1:66998400-66999400	Flanking Active TSS	Fetal Thymus	thymus
49	chr1:66998400-66999400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
50	chr1:66998400-66999400	Flanking Active TSS	NH-A	brain

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