Variant report

Variant	rs12046904
Chromosome Location	chr1:67013252-67013253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10493411	0.88[EUR][1000 genomes]
rs11208900	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208901	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208902	0.84[ASN][1000 genomes]
rs11208910	0.84[EUR][1000 genomes]
rs12025668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034344	0.84[EUR][1000 genomes]
rs12048885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12565798	0.86[EUR][1000 genomes]
rs12567556	0.84[EUR][1000 genomes]
rs12567898	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12568801	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1445578	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1445579	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129039	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17129041	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17129043	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17129062	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129064	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129065	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795531	0.86[EUR][1000 genomes]
rs4655616	0.84[ASN][1000 genomes]
rs57941297	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699123	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6699568	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6701988	0.84[EUR][1000 genomes]
rs72916320	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72934143	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72934153	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7519639	0.88[EUR][1000 genomes]
rs7532400	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7532598	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532613	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7544247	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7544505	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs967324	0.83[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:67008400-67018000	Weak transcription	Lung	lung
7	chr1:67009000-67019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:67009400-67013800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr1:67009600-67018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:67009600-67019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:67009800-67028200	Weak transcription	Brain Germinal Matrix	brain
12	chr1:67010000-67013400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:67010000-67018600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:67010000-67018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
16	chr1:67010800-67018600	Weak transcription	Osteobl	bone
17	chr1:67011000-67028000	Weak transcription	HUVEC	blood vessel
18	chr1:67011200-67021800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:67011200-67022000	Weak transcription	Pancreas	Pancrea
20	chr1:67011400-67017800	Weak transcription	Left Ventricle	heart
21	chr1:67011600-67017600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:67011800-67029800	Weak transcription	Fetal Brain Male	brain
23	chr1:67012200-67017800	Weak transcription	NHDF-Ad	bronchial
24	chr1:67012400-67013400	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:67012400-67013400	Weak transcription	Brain Substantia Nigra	brain
26	chr1:67012400-67014400	Weak transcription	Fetal Heart	heart
27	chr1:67012400-67015400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:67012400-67018000	Weak transcription	Fetal Lung	lung
29	chr1:67012400-67021400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:67012800-67014000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:67013000-67018000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:67013200-67013400	Enhancers	Brain Cingulate Gyrus	brain
33	chr1:67013200-67013600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:67013200-67013600	Genic enhancers	NHLF	lung
35	chr1:67013200-67013800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:67013200-67013800	Enhancers	Aorta	Aorta
37	chr1:67013200-67013800	Enhancers	Brain Anterior Caudate	brain
38	chr1:67013200-67013800	Enhancers	Esophagus	oesophagus
39	chr1:67013200-67014000	Enhancers	Brain Angular Gyrus	brain

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