The 2.0 version of rSNPBase

Variant report

Variant rs17129062
Chromosome Location chr1:67006253-67006254
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67000200-67006400 Weak transcription H9 Cell Line embryonic stem cell
2 chr1:67000400-67008000 Weak transcription Lung lung
3 chr1:67000400-67022000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:67000800-67029800 Weak transcription Primary hematopoietic stem cells blood
5 chr1:67001000-67008000 Weak transcription Left Ventricle heart
6 chr1:67001200-67022000 Weak transcription Right Ventricle heart
7 chr1:67001600-67011000 Weak transcription Stomach Smooth Muscle stomach
8 chr1:67002000-67010600 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:67002200-67006400 Weak transcription Osteobl bone
10 chr1:67002600-67006400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:67002800-67008200 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:67003000-67012400 Enhancers Brain Hippocampus Middle brain
13 chr1:67003800-67008000 Enhancers Brain Anterior Caudate brain
14 chr1:67004200-67009200 Enhancers Brain Cingulate Gyrus brain
15 chr1:67004200-67009600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:67004200-67012200 Enhancers NHDF-Ad bronchial
17 chr1:67004200-67012400 Enhancers Fetal Heart heart
18 chr1:67004400-67006600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:67004800-67006600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:67004800-67006800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:67004800-67006800 Enhancers NHEK skin
22 chr1:67004800-67012400 Enhancers Brain Substantia Nigra brain
23 chr1:67005000-67007000 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr1:67005000-67007200 Enhancers ES-I3 Cell Line embryonic stem cell
25 chr1:67005000-67007200 Enhancers HUES64 Cell Line embryonic stem cell
26 chr1:67005000-67007400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
27 chr1:67005000-67008600 Enhancers Brain Inferior Temporal Lobe brain
28 chr1:67005200-67006400 Enhancers iPS-15b Cell Line embryonic stem cell
29 chr1:67005200-67007000 Enhancers HUES48 Cell Line embryonic stem cell
30 chr1:67005200-67007000 Enhancers HUES6 Cell Line embryonic stem cell
31 chr1:67005200-67007200 Enhancers NH-A brain
32 chr1:67005400-67006800 Enhancers Fetal Lung lung
33 chr1:67005400-67007000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:67005400-67007000 Enhancers iPS-20b Cell Line embryonic stem cell
35 chr1:67005400-67007200 Enhancers H1 Cell Line embryonic stem cell
36 chr1:67005400-67007200 Genic enhancers Muscle Satellite Cultured Cells --
37 chr1:67005400-67012200 Enhancers Brain Angular Gyrus brain
38 chr1:67005600-67006400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:67005600-67006400 Weak transcription Aorta Aorta
40 chr1:67005600-67007200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:67005600-67007200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:67005600-67008000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:67005600-67008000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:67005600-67008400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:67005600-67008800 Weak transcription HMEC breast
46 chr1:67005800-67010600 Weak transcription Fetal Brain Female brain
47 chr1:67006000-67006400 Enhancers Fetal Brain Male brain
48 chr1:67006000-67006400 Flanking Active TSS NHLF lung
49 chr1:67006000-67006600 Enhancers iPS-18 Cell Line embryonic stem cell
50 chr1:67006000-67006600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015