Variant report

Variant	rs17129041
Chromosome Location	chr1:66996037-66996038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:66995342-66996462	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
SGIP1	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10493408	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493411	0.82[CEU][hapmap]
rs11208896	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208897	0.81[ASN][1000 genomes]
rs11208898	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11208900	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11208901	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11208902	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs11208910	0.82[CEU][hapmap]
rs11208916	0.82[CEU][hapmap]
rs11208924	0.82[CEU][hapmap]
rs11208930	0.81[CEU][hapmap]
rs11208937	0.82[CEU][hapmap]
rs12022565	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025668	0.87[EUR][1000 genomes]
rs12040232	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12043594	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046520	0.81[CEU][hapmap]
rs12046904	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12048885	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs12567898	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12568801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338196	0.99[ASN][1000 genomes]
rs1338199	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338201	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338202	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338203	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338206	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338207	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445578	0.93[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1445579	0.93[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129062	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129064	0.93[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17129065	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4655614	1.00[ASN][1000 genomes]
rs4655616	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs57941297	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6588214	0.81[CEU][hapmap]
rs6664942	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665299	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686606	0.82[CEU][hapmap]
rs6689119	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689313	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693644	1.00[ASN][1000 genomes]
rs6697068	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6699123	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6699568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6701907	0.82[CEU][hapmap]
rs72916320	0.87[EUR][1000 genomes]
rs72934129	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934131	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934142	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934153	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532400	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7532598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532613	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7533806	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533837	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535076	0.82[CEU][hapmap]
rs7544247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7544505	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7549881	1.00[ASN][1000 genomes]
rs967324	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66988400-66998200	Weak transcription	Osteobl	bone
2	chr1:66991800-66998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:66992000-66997400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:66993600-66997400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:66993600-66997400	Weak transcription	NHDF-Ad	bronchial
6	chr1:66993600-66997600	Weak transcription	Fetal Heart	heart
7	chr1:66993600-66998200	Weak transcription	NHEK	skin
8	chr1:66993800-66998000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:66994000-66998000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:66994600-66996200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:66994800-66996800	Weak transcription	Left Ventricle	heart
12	chr1:66994800-66997000	Weak transcription	NHLF	lung
13	chr1:66995000-66997000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:66995000-66997200	Weak transcription	HUVEC	blood vessel
15	chr1:66995200-66996200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:66995200-66996200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:66995200-66996200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr1:66995400-66996200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:66995400-66996200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:66995600-66996200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr1:66995600-66996200	Enhancers	HUES6 Cell Line	embryonic stem cell

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