Variant report

Variant	rs1350943
Chromosome Location	chr6:110390643-110390644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12660108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12662027	0.87[EUR][1000 genomes]
rs12662099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12662559	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12662965	0.89[ASN][1000 genomes]
rs12664024	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12664697	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12665152	0.87[EUR][1000 genomes]
rs12665178	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12665650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1350944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462491	1.00[ASN][1000 genomes]
rs2002631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2361500	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2885293	0.87[EUR][1000 genomes]
rs3806158	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3828928	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41288574	0.87[EUR][1000 genomes]
rs41288576	0.87[EUR][1000 genomes]
rs56662730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57771959	0.87[EUR][1000 genomes]
rs58100980	1.00[EUR][1000 genomes]
rs58965432	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59181827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60105161	0.87[EUR][1000 genomes]
rs61494781	0.87[EUR][1000 genomes]
rs6568630	0.93[ASN][1000 genomes]
rs6918158	1.00[JPT][hapmap]
rs6922245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6922536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926993	0.94[EUR][1000 genomes]
rs6927304	0.93[ASN][1000 genomes]
rs6927464	1.00[JPT][hapmap]
rs6935544	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6937364	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6940347	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6941101	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73533811	0.93[ASN][1000 genomes]
rs73765657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73765660	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73765665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7752069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7770634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771649	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7771909	0.87[EUR][1000 genomes]
rs9374149	0.94[ASN][1000 genomes]
rs9374151	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374152	1.00[ASN][1000 genomes]
rs9374153	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374155	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9384733	0.93[ASN][1000 genomes]
rs9386871	0.89[ASN][1000 genomes]
rs9386873	0.94[ASN][1000 genomes]
rs9386874	0.94[ASN][1000 genomes]
rs9386875	0.94[ASN][1000 genomes]
rs9386877	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386878	0.97[ASN][1000 genomes]
rs9386879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398230	0.93[ASN][1000 genomes]
rs9400356	0.90[ASN][1000 genomes]
rs9400357	0.90[ASN][1000 genomes]
rs9400358	0.93[ASN][1000 genomes]
rs9400361	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400362	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9487324	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023185	chr6:110386197-110416868	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1029169	chr6:110389869-110413225	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110385200-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:110387800-110391600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:110388400-110391400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:110389200-110391400	Enhancers	Brain Hippocampus Middle	brain
6	chr6:110389600-110390800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:110389600-110391200	Enhancers	Brain Anterior Caudate	brain
8	chr6:110389800-110391200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:110390000-110391000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:110390000-110391000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:110390000-110391000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:110390000-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:110390000-110391400	Enhancers	Brain Angular Gyrus	brain
14	chr6:110390000-110405200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:110390200-110391000	Weak transcription	Fetal Heart	heart
16	chr6:110390600-110391000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:110390600-110391600	Enhancers	Brain Substantia Nigra	brain

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