Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110026083..110027087-chr6:110374560..110375697,12	MCF-7	breast:
2	chr6:110369283..110371139-chr6:110374130..110376200,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12660108	0.80[ASN][1000 genomes]
rs12662965	0.94[ASN][1000 genomes]
rs12664024	0.90[ASN][1000 genomes]
rs12665650	0.80[ASN][1000 genomes]
rs1350943	0.94[ASN][1000 genomes]
rs1350944	0.94[ASN][1000 genomes]
rs1381688	0.94[ASN][1000 genomes]
rs1462491	0.94[ASN][1000 genomes]
rs2002631	0.80[ASN][1000 genomes]
rs56662730	0.92[ASN][1000 genomes]
rs6568630	0.99[ASN][1000 genomes]
rs6922245	0.80[ASN][1000 genomes]
rs6922536	0.92[ASN][1000 genomes]
rs6927304	0.99[ASN][1000 genomes]
rs73533811	0.99[ASN][1000 genomes]
rs73765657	0.94[ASN][1000 genomes]
rs73765660	0.93[ASN][1000 genomes]
rs7752069	0.92[ASN][1000 genomes]
rs7770634	0.94[ASN][1000 genomes]
rs9374149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374151	0.97[ASN][1000 genomes]
rs9374152	0.94[ASN][1000 genomes]
rs9374153	0.92[ASN][1000 genomes]
rs9374154	0.94[ASN][1000 genomes]
rs9374155	0.92[ASN][1000 genomes]
rs9374157	0.92[ASN][1000 genomes]
rs9384733	0.99[ASN][1000 genomes]
rs9386871	0.94[ASN][1000 genomes]
rs9386874	1.00[ASN][1000 genomes]
rs9386875	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386877	0.92[ASN][1000 genomes]
rs9386878	0.92[ASN][1000 genomes]
rs9386879	0.92[ASN][1000 genomes]
rs9398230	0.99[ASN][1000 genomes]
rs9400356	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9400357	0.96[ASN][1000 genomes]
rs9400358	0.99[ASN][1000 genomes]
rs9400361	0.92[ASN][1000 genomes]
rs9400362	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110375000-110376600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:110375000-110380800	Weak transcription	Ovary	ovary
3	chr6:110375200-110376400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:110375200-110376400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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