Variant report
Variant | rs9384733 |
---|---|
Chromosome Location | chr6:110383699-110383700 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:177239611..177240533-chr6:110383175..110384084,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12662099 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs12662559 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs12662965 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12664024 | 0.89[ASN][1000 genomes] |
rs12664697 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs12665178 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs1350943 | 0.93[ASN][1000 genomes] |
rs1350944 | 0.93[ASN][1000 genomes] |
rs1381688 | 0.93[ASN][1000 genomes] |
rs1462491 | 0.93[ASN][1000 genomes] |
rs2361500 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs3806158 | 1.00[JPT][hapmap] |
rs3828928 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs56662730 | 0.90[ASN][1000 genomes] |
rs6568630 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6918158 | 1.00[JPT][hapmap] |
rs6922536 | 0.90[ASN][1000 genomes] |
rs6927304 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6927464 | 1.00[JPT][hapmap] |
rs6935544 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs6937364 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs6940347 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs73533808 | 0.82[AMR][1000 genomes] |
rs73533811 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73765657 | 0.93[ASN][1000 genomes] |
rs73765660 | 0.92[ASN][1000 genomes] |
rs7752069 | 0.90[ASN][1000 genomes] |
rs7770634 | 0.93[ASN][1000 genomes] |
rs7771649 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs9374149 | 0.99[ASN][1000 genomes] |
rs9374151 | 0.96[ASN][1000 genomes] |
rs9374152 | 0.93[ASN][1000 genomes] |
rs9374153 | 0.90[ASN][1000 genomes] |
rs9374154 | 0.93[ASN][1000 genomes] |
rs9374155 | 0.90[ASN][1000 genomes] |
rs9374157 | 0.90[ASN][1000 genomes] |
rs9386871 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9386873 | 0.99[ASN][1000 genomes] |
rs9386874 | 0.99[ASN][1000 genomes] |
rs9386875 | 0.99[ASN][1000 genomes] |
rs9386877 | 0.90[ASN][1000 genomes] |
rs9386878 | 0.90[ASN][1000 genomes] |
rs9386879 | 0.90[ASN][1000 genomes] |
rs9398230 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9400356 | 0.94[ASN][1000 genomes] |
rs9400357 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9400358 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9400361 | 0.90[ASN][1000 genomes] |
rs9400362 | 0.90[ASN][1000 genomes] |
rs9487324 | 1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1017642 | chr6:110252276-110386453 | Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv538417 | chr6:110252276-110386453 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv886535 | chr6:110377006-110551463 | Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:110376400-110384600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr6:110382200-110383800 | Weak transcription | Fetal Thymus | thymus |
3 | chr6:110382400-110384000 | Weak transcription | Thymus | Thymus |
4 | chr6:110383000-110384200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
5 | chr6:110383200-110391000 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |