Variant report

Variant	rs9400361
Chromosome Location	chr6:110398931-110398932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110393980..110396773-chr6:110396779..110399595,3	K562	blood:
2	chr6:110397087..110399467-chr6:110408778..110410725,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11753218	1.00[CHB][hapmap]
rs12660108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12662027	0.87[EUR][1000 genomes]
rs12662099	0.87[EUR][1000 genomes]
rs12662559	1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs12662965	0.86[ASN][1000 genomes]
rs12664024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664697	1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs12665152	0.87[EUR][1000 genomes]
rs12665178	0.87[EUR][1000 genomes]
rs12665650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1350943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1350944	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1381688	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1462491	0.97[ASN][1000 genomes]
rs2002631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2361500	0.87[EUR][1000 genomes]
rs2885293	0.87[EUR][1000 genomes]
rs3806158	0.86[EUR][1000 genomes]
rs3828928	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41288574	0.87[EUR][1000 genomes]
rs41288576	0.87[EUR][1000 genomes]
rs56662730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57771959	0.87[EUR][1000 genomes]
rs58100980	1.00[EUR][1000 genomes]
rs58965432	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59181827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60105161	0.87[EUR][1000 genomes]
rs61494781	0.87[EUR][1000 genomes]
rs6568630	0.90[ASN][1000 genomes]
rs6903849	1.00[LWK][hapmap];0.87[YRI][hapmap]
rs6914473	1.00[LWK][hapmap];0.87[YRI][hapmap]
rs6922245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6922536	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926993	0.94[EUR][1000 genomes]
rs6927304	0.90[ASN][1000 genomes]
rs6927464	1.00[MEX][hapmap]
rs6935544	1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs6937364	0.87[EUR][1000 genomes]
rs6940347	1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6941101	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73533811	0.90[ASN][1000 genomes]
rs73765657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73765660	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73765665	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7752069	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7771649	0.87[EUR][1000 genomes]
rs7771909	0.87[EUR][1000 genomes]
rs9374149	0.92[ASN][1000 genomes]
rs9374151	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9374152	0.97[ASN][1000 genomes]
rs9374153	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9374154	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384733	0.90[ASN][1000 genomes]
rs9386871	0.86[ASN][1000 genomes]
rs9386873	0.92[ASN][1000 genomes]
rs9386874	0.92[ASN][1000 genomes]
rs9386875	0.92[ASN][1000 genomes]
rs9386877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386878	1.00[ASN][1000 genomes]
rs9386879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398230	0.90[ASN][1000 genomes]
rs9400356	0.87[ASN][1000 genomes]
rs9400357	0.88[ASN][1000 genomes]
rs9400358	0.90[ASN][1000 genomes]
rs9400362	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023185	chr6:110386197-110416868	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1029169	chr6:110389869-110413225	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv2763956	chr6:110394513-110413237	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2761056	chr6:110394513-110415428	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1017890	chr6:110394894-110416868	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv7954	chr6:110395986-110413365	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv33686	chr6:110396119-110413310	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604487	chr6:110396540-110406212	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv604488	chr6:110396540-110406426	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604489	chr6:110396540-110408904	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604490	chr6:110396540-110411065	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604491	chr6:110396540-110412259	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1026085	chr6:110396676-110420721	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv604492	chr6:110398923-110411065	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv604493	chr6:110398923-110412259	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9400361	WASF1	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110390000-110405200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:110397000-110412800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:110397000-110415400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links