Variant report

Variant	rs9400356
Chromosome Location	chr6:110366813-110366814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12662099	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12662559	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12662965	0.99[ASN][1000 genomes]
rs12664024	0.86[ASN][1000 genomes]
rs12664697	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12665178	1.00[JPT][hapmap]
rs1350943	0.90[ASN][1000 genomes]
rs1350944	0.90[ASN][1000 genomes]
rs1381688	0.90[ASN][1000 genomes]
rs1462491	0.90[ASN][1000 genomes]
rs2361500	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs3806158	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs3828928	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs56662730	0.87[ASN][1000 genomes]
rs6568630	0.94[ASN][1000 genomes]
rs6918158	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs6922536	0.87[ASN][1000 genomes]
rs6927304	0.94[ASN][1000 genomes]
rs6927464	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs6935544	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs6937364	1.00[JPT][hapmap]
rs6940347	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs73533811	0.94[ASN][1000 genomes]
rs73765657	0.90[ASN][1000 genomes]
rs73765660	0.89[ASN][1000 genomes]
rs7752069	0.87[ASN][1000 genomes]
rs7770634	0.90[ASN][1000 genomes]
rs7771649	1.00[JPT][hapmap]
rs9374149	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9374151	0.93[ASN][1000 genomes]
rs9374152	0.90[ASN][1000 genomes]
rs9374153	0.87[ASN][1000 genomes]
rs9374154	0.90[ASN][1000 genomes]
rs9374155	0.87[ASN][1000 genomes]
rs9374157	0.87[ASN][1000 genomes]
rs9384733	0.94[ASN][1000 genomes]
rs9386871	0.99[ASN][1000 genomes]
rs9386873	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386874	0.96[ASN][1000 genomes]
rs9386875	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386877	0.87[ASN][1000 genomes]
rs9386878	0.87[ASN][1000 genomes]
rs9386879	0.87[ASN][1000 genomes]
rs9398230	0.94[ASN][1000 genomes]
rs9400357	0.97[ASN][1000 genomes]
rs9400358	0.94[ASN][1000 genomes]
rs9400361	0.87[ASN][1000 genomes]
rs9400362	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110365400-110367000	Enhancers	Dnd41	blood
2	chr6:110366000-110370800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:110366600-110367200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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