Variant report

Variant	rs9374151
Chromosome Location	chr6:110387765-110387766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12660108	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12662027	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12662099	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12662559	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12662965	0.91[ASN][1000 genomes]
rs12664024	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12664697	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12665152	0.87[EUR][1000 genomes]
rs12665178	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12665650	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1350943	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1350944	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1381688	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1462491	0.97[ASN][1000 genomes]
rs2002631	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2361500	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes]
rs2885293	0.87[EUR][1000 genomes]
rs3806158	0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs3828928	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs41288574	0.87[EUR][1000 genomes]
rs41288576	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56662730	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57771959	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58100980	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58965432	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59181827	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60105161	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61494781	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6568630	0.96[ASN][1000 genomes]
rs6922245	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6922536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926993	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6927304	0.96[ASN][1000 genomes]
rs6927464	0.85[AMR][1000 genomes]
rs6935544	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6937364	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6940347	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6941101	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73533811	0.96[ASN][1000 genomes]
rs73765657	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73765660	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73765665	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752069	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7770634	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7771649	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7771909	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9374149	0.97[ASN][1000 genomes]
rs9374152	0.97[ASN][1000 genomes]
rs9374153	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9374154	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374155	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9374157	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9384733	0.96[ASN][1000 genomes]
rs9386871	0.91[ASN][1000 genomes]
rs9386873	0.97[ASN][1000 genomes]
rs9386874	0.97[ASN][1000 genomes]
rs9386875	0.97[ASN][1000 genomes]
rs9386877	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386878	0.94[ASN][1000 genomes]
rs9386879	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398230	0.96[ASN][1000 genomes]
rs9400356	0.93[ASN][1000 genomes]
rs9400357	0.93[ASN][1000 genomes]
rs9400358	0.96[ASN][1000 genomes]
rs9400361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400362	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023185	chr6:110386197-110416868	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110385200-110389000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:110385200-110389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:110385200-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:110385400-110388600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:110387400-110388800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:110387400-110389400	Weak transcription	Brain Cingulate Gyrus	brain

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