Variant report
| Variant | rs73533811 |
|---|---|
| Chromosome Location | chr6:110382434-110382435 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs12662965 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12664024 | 0.89[ASN][1000 genomes] |
| rs1350943 | 0.93[ASN][1000 genomes] |
| rs1350944 | 0.93[ASN][1000 genomes] |
| rs1381688 | 0.93[ASN][1000 genomes] |
| rs1462491 | 0.93[ASN][1000 genomes] |
| rs56662730 | 0.90[ASN][1000 genomes] |
| rs6568630 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6922536 | 0.90[ASN][1000 genomes] |
| rs6927304 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73765657 | 0.93[ASN][1000 genomes] |
| rs73765660 | 0.92[ASN][1000 genomes] |
| rs7752069 | 0.90[ASN][1000 genomes] |
| rs7770634 | 0.93[ASN][1000 genomes] |
| rs9374149 | 0.99[ASN][1000 genomes] |
| rs9374151 | 0.96[ASN][1000 genomes] |
| rs9374152 | 0.93[ASN][1000 genomes] |
| rs9374153 | 0.90[ASN][1000 genomes] |
| rs9374154 | 0.93[ASN][1000 genomes] |
| rs9374155 | 0.90[ASN][1000 genomes] |
| rs9374157 | 0.90[ASN][1000 genomes] |
| rs9384733 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9386871 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9386873 | 0.99[ASN][1000 genomes] |
| rs9386874 | 0.99[ASN][1000 genomes] |
| rs9386875 | 0.99[ASN][1000 genomes] |
| rs9386877 | 0.90[ASN][1000 genomes] |
| rs9386878 | 0.90[ASN][1000 genomes] |
| rs9386879 | 0.90[ASN][1000 genomes] |
| rs9398230 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9400356 | 0.94[ASN][1000 genomes] |
| rs9400357 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9400358 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9400361 | 0.90[ASN][1000 genomes] |
| rs9400362 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017642 | chr6:110252276-110386453 | Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv538417 | chr6:110252276-110386453 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886535 | chr6:110377006-110551463 | Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs73533811 | WASF1 | cis | Nerve Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:110376400-110384600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr6:110382200-110383800 | Weak transcription | Fetal Thymus | thymus |
| 3 | chr6:110382400-110384000 | Weak transcription | Thymus | Thymus |
