Variant report

Variant	rs6568630
Chromosome Location	chr6:110372555-110372556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110042492..110045032-chr6:110370097..110372632,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12662099	1.00[JPT][hapmap]
rs12662559	1.00[JPT][hapmap]
rs12662965	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12664024	0.89[ASN][1000 genomes]
rs12664697	1.00[JPT][hapmap]
rs12665178	1.00[JPT][hapmap]
rs1350943	0.93[ASN][1000 genomes]
rs1350944	0.93[ASN][1000 genomes]
rs1381688	0.93[ASN][1000 genomes]
rs1462491	0.93[ASN][1000 genomes]
rs2361500	1.00[JPT][hapmap]
rs3806158	1.00[JPT][hapmap]
rs3828928	1.00[JPT][hapmap]
rs56662730	0.90[ASN][1000 genomes]
rs6918158	1.00[JPT][hapmap]
rs6922536	0.90[ASN][1000 genomes]
rs6927304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927464	1.00[JPT][hapmap]
rs6935544	1.00[JPT][hapmap]
rs6937364	1.00[JPT][hapmap]
rs6940347	1.00[JPT][hapmap]
rs73533811	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73765657	0.93[ASN][1000 genomes]
rs73765660	0.92[ASN][1000 genomes]
rs7752069	0.90[ASN][1000 genomes]
rs7770634	0.93[ASN][1000 genomes]
rs7771649	1.00[JPT][hapmap]
rs9374149	0.99[ASN][1000 genomes]
rs9374151	0.96[ASN][1000 genomes]
rs9374152	0.93[ASN][1000 genomes]
rs9374153	0.90[ASN][1000 genomes]
rs9374154	0.93[ASN][1000 genomes]
rs9374155	0.90[ASN][1000 genomes]
rs9374157	0.90[ASN][1000 genomes]
rs9384733	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386871	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386873	0.99[ASN][1000 genomes]
rs9386874	0.99[ASN][1000 genomes]
rs9386875	0.99[ASN][1000 genomes]
rs9386877	0.90[ASN][1000 genomes]
rs9386878	0.90[ASN][1000 genomes]
rs9386879	0.90[ASN][1000 genomes]
rs9398230	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400356	0.94[ASN][1000 genomes]
rs9400357	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9400358	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400361	0.90[ASN][1000 genomes]
rs9400362	0.90[ASN][1000 genomes]
rs9487324	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110371600-110374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:110372400-110373800	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links