Variant report

Variant	rs1373102
Chromosome Location	chr9:92757454-92757455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92756890..92759147-chr9:92762216..92764609,2	MCF-7	breast:
2	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:
3	chr9:92218567..92220178-chr9:92756424..92758715,2	MCF-7	breast:
4	chr9:92216749..92221414-chr9:92756839..92763409,10	MCF-7	breast:
5	chr9:92755082..92756623-chr9:92757434..92759681,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13296044	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443358	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443360	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35150414	0.81[AMR][1000 genomes]
rs501675	0.81[AMR][1000 genomes]
rs535599	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs557789	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs601472	0.85[CEU][hapmap];0.89[GIH][hapmap];0.81[AMR][1000 genomes]
rs613212	0.81[AMR][1000 genomes]
rs627985	0.85[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes]
rs628020	0.84[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes]
rs633926	0.85[CEU][hapmap];0.83[CHB][hapmap];0.89[GIH][hapmap];0.81[AMR][1000 genomes]
rs650415	0.81[AMR][1000 genomes]
rs650882	0.81[AMR][1000 genomes]
rs661232	0.81[AMR][1000 genomes]
rs666603	0.81[AMR][1000 genomes]
rs679273	0.84[CEU][hapmap];0.89[GIH][hapmap]
rs683669	0.85[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes]
rs7018766	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7036231	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs704476	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs920752	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3402834	chr9:92753532-92758030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
3	chr9:92752800-92759600	Enhancers	Liver	Liver
4	chr9:92753600-92757800	Enhancers	Pancreas	Pancrea
5	chr9:92753600-92758000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
7	chr9:92754000-92758600	Enhancers	Fetal Heart	heart
8	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
9	chr9:92754200-92759200	Enhancers	Placenta	Placenta
10	chr9:92754400-92757600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:92754400-92758000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:92754400-92758000	Enhancers	Left Ventricle	heart
13	chr9:92754400-92758000	Enhancers	Right Ventricle	heart
14	chr9:92754400-92758200	Enhancers	Lung	lung
15	chr9:92754400-92758200	Enhancers	Ovary	ovary
16	chr9:92754600-92758000	Enhancers	Fetal Muscle Leg	muscle
17	chr9:92754600-92758800	Enhancers	Right Atrium	heart
18	chr9:92754800-92757600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:92754800-92758600	Enhancers	Adipose Nuclei	Adipose
20	chr9:92755000-92758400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:92755000-92762000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:92755200-92757600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:92755200-92757800	Enhancers	Primary B cells from cord blood	blood
24	chr9:92755200-92758200	Enhancers	Duodenum Mucosa	Duodenum
25	chr9:92755200-92758200	Enhancers	Spleen	Spleen
26	chr9:92755400-92757600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:92755400-92757600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr9:92755400-92758200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr9:92755400-92758200	Enhancers	Fetal Lung	lung
30	chr9:92755600-92757600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:92755600-92757800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:92755600-92757800	Enhancers	Stomach Smooth Muscle	stomach
33	chr9:92756000-92757800	Enhancers	HSMMtube	muscle
34	chr9:92756000-92758200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr9:92756000-92761800	Weak transcription	Brain Substantia Nigra	brain
36	chr9:92756200-92757600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr9:92756200-92758600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:92756200-92761800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:92756400-92757600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr9:92756400-92757800	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr9:92756600-92757600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr9:92756600-92757600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr9:92756600-92758000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr9:92756600-92758000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr9:92756800-92757800	Weak transcription	Esophagus	oesophagus
46	chr9:92756800-92758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:92756800-92760600	Weak transcription	NHDF-Ad	bronchial
48	chr9:92756800-92761600	Weak transcription	Psoas Muscle	Psoas
49	chr9:92757000-92758000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:92757000-92758000	Weak transcription	Colonic Mucosa	Colon

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