Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:92748243..92750612-chr9:92751364..92753556,2	MCF-7	breast:
2	chr9:92743278..92746160-chr9:92749145..92750890,2	MCF-7	breast:
3	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13296044	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1373102	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443360	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35150414	0.82[AMR][1000 genomes]
rs501675	0.82[AMR][1000 genomes]
rs535599	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs601472	0.82[AMR][1000 genomes]
rs613212	0.82[AMR][1000 genomes]
rs627985	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs628020	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs633926	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs650415	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs650882	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs661232	0.82[AMR][1000 genomes]
rs666603	0.82[AMR][1000 genomes]
rs679273	0.81[AMR][1000 genomes]
rs683669	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7036231	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs704476	0.82[AMR][1000 genomes]
rs920752	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92752800	Weak transcription	Liver	Liver
2	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
3	chr9:92747600-92750800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:92747600-92751400	Weak transcription	Right Atrium	heart
5	chr9:92747600-92753200	Weak transcription	NHEK	skin
6	chr9:92748600-92754400	Weak transcription	Lung	lung
7	chr9:92748800-92754000	Weak transcription	Esophagus	oesophagus
8	chr9:92749000-92752800	Enhancers	Placenta	Placenta
9	chr9:92749000-92753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:92749200-92753000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:92749400-92750600	Enhancers	Primary hematopoietic stem cells	blood
12	chr9:92749400-92750600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:92749600-92752200	Enhancers	Fetal Heart	heart
14	chr9:92750000-92751000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr9:92750000-92751600	Enhancers	HSMM	muscle
16	chr9:92750000-92751600	Enhancers	HSMMtube	muscle
17	chr9:92750200-92751600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:92750200-92752400	Enhancers	Fetal Muscle Leg	muscle
19	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:92750400-92751200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr9:92750400-92751400	Weak transcription	Primary B cells from cord blood	blood
22	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search: