Variant report

Variant	rs633926
Chromosome Location	chr9:92788679-92788680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92774758..92776459-chr9:92788172..92789725,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10820832	0.89[AFR][1000 genomes]
rs13296044	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[GIH][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs1373102	0.85[CEU][hapmap];0.83[CHB][hapmap];0.89[GIH][hapmap];0.81[AMR][1000 genomes]
rs1443358	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1443360	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35150414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs501675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs535599	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs557789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs601472	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs613212	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs627985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636460	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs650415	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs650882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs657899	0.81[ASW][hapmap]
rs661232	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs666603	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs679273	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs683669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018766	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7036231	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs704476	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs816526	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs920752	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:92783000-92789000	Enhancers	Primary B cells from cord blood	blood
3	chr9:92787000-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:92787200-92789200	Enhancers	HMEC	breast
5	chr9:92787400-92789000	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:92787400-92789200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:92787600-92789200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:92787600-92790200	Enhancers	NHEK	skin
9	chr9:92787800-92789000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:92787800-92789800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:92788000-92789800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:92788000-92789800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:92788000-92790000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr9:92788000-92790000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:92788000-92790200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:92788200-92789200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:92788200-92789800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:92788400-92789200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:92788400-92789400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr9:92788400-92790000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:92788400-92794800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:92788600-92791200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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