Variant report

Variant	rs35150414
Chromosome Location	chr9:92781492-92781493
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92779670..92782151-chr9:92784242..92786135,2	MCF-7	breast:
2	chr9:92775713..92778575-chr9:92781169..92782694,2	MCF-7	breast:
3	chr9:92776616..92778176-chr9:92780846..92782771,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263967	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1373102	0.81[AMR][1000 genomes]
rs1443358	0.82[AMR][1000 genomes]
rs1443360	0.87[AMR][1000 genomes]
rs501675	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs535599	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs557789	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs601472	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs613212	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs627985	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs628020	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs633926	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs636460	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs650415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs650882	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs661232	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs666603	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs679273	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs683669	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7018766	0.82[AMR][1000 genomes]
rs7036231	0.82[AMR][1000 genomes]
rs704476	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs816526	0.85[AMR][1000 genomes]
rs920752	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus
2	chr9:92777800-92782600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:92778800-92781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:92780400-92781600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:92780600-92781600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:92780600-92781600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:92780600-92784800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:92780800-92781600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:92780800-92781800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:92780800-92781800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:92781000-92781600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr9:92781000-92782800	Enhancers	Lung	lung
13	chr9:92781000-92783800	Enhancers	Aorta	Aorta
14	chr9:92781200-92783000	Weak transcription	Primary B cells from cord blood	blood
15	chr9:92781200-92783400	Enhancers	HSMMtube	muscle
16	chr9:92781400-92783600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:92781400-92784000	Enhancers	HSMM	muscle
18	chr9:92781400-92784200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:92781400-92784800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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