Variant report

Variant	rs7036231
Chromosome Location	chr9:92754470-92754471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92753705..92756579-chr9:92759778..92762031,2	MCF-7	breast:
2	chr9:92218844..92221552-chr9:92753347..92755241,2	MCF-7	breast:
3	chr9:92741964..92746302-chr9:92752977..92756296,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13296044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1373102	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1443360	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35150414	0.82[AMR][1000 genomes]
rs501675	0.82[AMR][1000 genomes]
rs535599	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs557789	0.89[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs601472	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs613212	0.82[AMR][1000 genomes]
rs627985	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs628020	0.88[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs633926	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs650415	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs650882	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs661232	0.82[AMR][1000 genomes]
rs666603	0.82[AMR][1000 genomes]
rs679273	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs683669	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7018766	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs704476	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs920752	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3402834	chr9:92753532-92758030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
2	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:92750600-92755400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:92750800-92755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:92751600-92756000	Weak transcription	HSMMtube	muscle
7	chr9:92751600-92756200	Weak transcription	HSMM	muscle
8	chr9:92751800-92756000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:92752200-92755200	Weak transcription	Primary B cells from cord blood	blood
10	chr9:92752200-92757400	Enhancers	Stomach Mucosa	stomach
11	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
12	chr9:92752600-92757400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:92752800-92754600	Weak transcription	Gastric	stomach
14	chr9:92752800-92754600	Weak transcription	Right Atrium	heart
15	chr9:92752800-92759600	Enhancers	Liver	Liver
16	chr9:92753200-92754800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:92753200-92757200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr9:92753400-92756200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:92753600-92757800	Enhancers	Pancreas	Pancrea
20	chr9:92753600-92758000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
22	chr9:92753800-92754600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:92754000-92755000	Enhancers	Esophagus	oesophagus
24	chr9:92754000-92758600	Enhancers	Fetal Heart	heart
25	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
26	chr9:92754200-92755400	Weak transcription	Brain Substantia Nigra	brain
27	chr9:92754200-92759200	Enhancers	Placenta	Placenta
28	chr9:92754400-92754600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr9:92754400-92754600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr9:92754400-92754600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:92754400-92755000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:92754400-92755000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:92754400-92755200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:92754400-92755400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:92754400-92756400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:92754400-92757600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr9:92754400-92758000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:92754400-92758000	Enhancers	Left Ventricle	heart
39	chr9:92754400-92758000	Enhancers	Right Ventricle	heart
40	chr9:92754400-92758200	Enhancers	Lung	lung
41	chr9:92754400-92758200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links