Variant report

Variant	rs666603
Chromosome Location	chr9:92777365-92777366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92776616..92778176-chr9:92780846..92782771,2	MCF-7	breast:
2	chr9:92213129..92215525-chr9:92775217..92778427,3	MCF-7	breast:
3	chr9:92219780..92221429-chr9:92776141..92778037,2	MCF-7	breast:
4	chr9:92775713..92778575-chr9:92781169..92782694,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10820832	0.80[AFR][1000 genomes]
rs1373102	0.81[AMR][1000 genomes]
rs1443358	0.82[AMR][1000 genomes]
rs1443360	0.87[AMR][1000 genomes]
rs35150414	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs501675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535599	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs557789	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs601472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs627985	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs628020	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs633926	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs636460	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs650415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs650882	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs661232	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs679273	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs683669	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7018766	0.82[AMR][1000 genomes]
rs7036231	0.82[AMR][1000 genomes]
rs704476	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816526	0.85[AMR][1000 genomes]
rs920752	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92771800-92781400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:92772200-92780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:92773400-92780400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr9:92773800-92780800	Weak transcription	Primary B cells from cord blood	blood
5	chr9:92775400-92778000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:92775600-92778800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:92775600-92780400	Weak transcription	Lung	lung
8	chr9:92775800-92780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:92775800-92780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:92775800-92780800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:92775800-92780800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:92775800-92781200	Weak transcription	HSMMtube	muscle
13	chr9:92776000-92777800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:92776200-92778000	Enhancers	NHEK	skin
15	chr9:92776200-92778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:92776400-92777800	Enhancers	HMEC	breast
17	chr9:92776400-92778800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus

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