Variant report

Variant	rs920752
Chromosome Location	chr9:92771853-92771854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92766437..92768027-chr9:92770302..92772264,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13296044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1373102	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1443358	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443360	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35150414	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs501675	0.88[AMR][1000 genomes]
rs535599	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs557789	0.89[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs601472	0.88[CEU][hapmap];0.88[AMR][1000 genomes]
rs613212	0.88[AMR][1000 genomes]
rs627985	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs628020	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs633926	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs636460	0.82[AMR][1000 genomes]
rs650415	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs650882	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs661232	0.88[AMR][1000 genomes]
rs666603	0.88[AMR][1000 genomes]
rs679273	0.88[CEU][hapmap];0.87[AMR][1000 genomes]
rs683669	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7018766	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7036231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs704476	0.89[CEU][hapmap];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:92768000-92774800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:92769000-92772000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:92769000-92773400	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:92769600-92772000	Enhancers	Stomach Mucosa	stomach
6	chr9:92770000-92772200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:92770000-92773200	Enhancers	Primary hematopoietic stem cells	blood
8	chr9:92770600-92773000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:92770800-92774800	Weak transcription	Fetal Intestine Large	intestine
10	chr9:92770800-92775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:92770800-92775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:92771200-92772400	Enhancers	Fetal Thymus	thymus
13	chr9:92771200-92772600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr9:92771400-92772000	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr9:92771400-92772000	Enhancers	Gastric	stomach
16	chr9:92771600-92772000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr9:92771600-92772000	Enhancers	Adipose Nuclei	Adipose
18	chr9:92771600-92772000	Enhancers	Fetal Muscle Trunk	muscle
19	chr9:92771600-92772000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr9:92771600-92772200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:92771600-92772200	Enhancers	GM12878-XiMat	blood
22	chr9:92771600-92772400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:92771800-92775400	Weak transcription	HSMMtube	muscle
24	chr9:92771800-92776400	Weak transcription	HSMM	muscle
25	chr9:92771800-92781400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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