Variant report

Variant	rs704476
Chromosome Location	chr9:92787643-92787644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIRAS2-4	chr9:92786845-92788381	ENSG00000227555

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10820832	0.86[AFR][1000 genomes]
rs13296044	0.88[CEU][hapmap]
rs1373102	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs1443358	0.82[AMR][1000 genomes]
rs1443360	0.87[AMR][1000 genomes]
rs35150414	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs501675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs535599	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs557789	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs601472	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs613212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs627985	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs628020	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs633926	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs636460	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs650415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs650882	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs661232	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs666603	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs679273	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs683669	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7018766	0.82[AMR][1000 genomes]
rs7036231	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs816526	0.85[AMR][1000 genomes]
rs920752	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92781400-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:92783000-92789000	Enhancers	Primary B cells from cord blood	blood
3	chr9:92783400-92787800	Weak transcription	HSMMtube	muscle
4	chr9:92784800-92788600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:92786000-92787800	Enhancers	Duodenum Mucosa	Duodenum
6	chr9:92786000-92787800	Enhancers	GM12878-XiMat	blood
7	chr9:92786200-92788400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr9:92786600-92788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:92786800-92788000	Enhancers	Fetal Intestine Small	intestine
10	chr9:92786800-92788200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:92786800-92788400	Enhancers	Adipose Nuclei	Adipose
12	chr9:92787000-92788000	Enhancers	Spleen	Spleen
13	chr9:92787000-92788200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:92787000-92788200	Enhancers	Fetal Intestine Large	intestine
15	chr9:92787000-92788400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:92787000-92788400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:92787000-92790400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:92787200-92788200	Enhancers	Esophagus	oesophagus
19	chr9:92787200-92788400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:92787200-92789200	Enhancers	HMEC	breast
21	chr9:92787400-92789000	Enhancers	Primary B cells from peripheral blood	blood
22	chr9:92787400-92789200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:92787600-92788000	Enhancers	Lung	lung
24	chr9:92787600-92788000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr9:92787600-92788200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:92787600-92788400	Enhancers	Fetal Muscle Leg	muscle
27	chr9:92787600-92789200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:92787600-92790200	Enhancers	NHEK	skin

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