Variant report
Variant | rs1433506 |
---|---|
Chromosome Location | chr7:48479687-48479688 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10254742 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10256975 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10262407 | 0.80[AFR][1000 genomes] |
rs10271606 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10273249 | 0.80[AFR][1000 genomes] |
rs10273640 | 0.80[AFR][1000 genomes] |
rs10274174 | 0.80[AFR][1000 genomes] |
rs10499682 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10499683 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1109443 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12112361 | 0.81[EUR][1000 genomes] |
rs12669930 | 0.96[EUR][1000 genomes] |
rs12669976 | 0.96[EUR][1000 genomes] |
rs12671073 | 0.81[EUR][1000 genomes] |
rs12672551 | 0.81[EUR][1000 genomes] |
rs12674031 | 0.96[EUR][1000 genomes] |
rs12718266 | 0.80[AFR][1000 genomes] |
rs1316349 | 0.81[EUR][1000 genomes] |
rs1316821 | 0.96[EUR][1000 genomes] |
rs1317162 | 0.81[EUR][1000 genomes] |
rs13233421 | 0.84[AFR][1000 genomes] |
rs13236501 | 0.84[AFR][1000 genomes] |
rs13243091 | 0.84[AFR][1000 genomes] |
rs13247279 | 0.84[AFR][1000 genomes] |
rs13307295 | 0.80[AFR][1000 genomes] |
rs1405920 | 0.96[EUR][1000 genomes] |
rs1433508 | 0.80[AFR][1000 genomes] |
rs1433509 | 0.80[AFR][1000 genomes] |
rs1527835 | 0.81[EUR][1000 genomes] |
rs1527839 | 0.81[EUR][1000 genomes] |
rs1527840 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1609213 | 0.81[EUR][1000 genomes] |
rs17092931 | 0.81[EUR][1000 genomes] |
rs17132335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17132373 | 0.96[EUR][1000 genomes] |
rs17132376 | 0.96[EUR][1000 genomes] |
rs17132383 | 0.96[EUR][1000 genomes] |
rs17132388 | 0.96[EUR][1000 genomes] |
rs17132402 | 0.94[EUR][1000 genomes] |
rs17132417 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17132439 | 0.81[EUR][1000 genomes] |
rs17132443 | 0.81[EUR][1000 genomes] |
rs17132460 | 0.81[EUR][1000 genomes] |
rs17132491 | 0.81[EUR][1000 genomes] |
rs1865194 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1918580 | 0.81[EUR][1000 genomes] |
rs1918581 | 0.81[EUR][1000 genomes] |
rs1918586 | 0.81[EUR][1000 genomes] |
rs1918587 | 0.81[EUR][1000 genomes] |
rs1918588 | 0.81[EUR][1000 genomes] |
rs1918589 | 0.81[EUR][1000 genomes] |
rs1918595 | 0.81[EUR][1000 genomes] |
rs1918596 | 0.81[EUR][1000 genomes] |
rs1918597 | 0.81[EUR][1000 genomes] |
rs1918606 | 0.81[EUR][1000 genomes] |
rs1918608 | 0.81[EUR][1000 genomes] |
rs1918613 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2178086 | 0.81[EUR][1000 genomes] |
rs2178087 | 0.81[EUR][1000 genomes] |
rs2217710 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2222731 | 0.81[EUR][1000 genomes] |
rs2362307 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs28369084 | 0.84[AFR][1000 genomes] |
rs28454544 | 0.80[AFR][1000 genomes] |
rs28481588 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2885484 | 0.94[EUR][1000 genomes] |
rs34541457 | 0.84[AFR][1000 genomes] |
rs34563223 | 0.84[AFR][1000 genomes] |
rs34691991 | 0.84[AFR][1000 genomes] |
rs34832520 | 0.84[AFR][1000 genomes] |
rs35754209 | 0.84[AFR][1000 genomes] |
rs35972471 | 0.84[AFR][1000 genomes] |
rs36035836 | 0.84[AFR][1000 genomes] |
rs4072501 | 0.81[EUR][1000 genomes] |
rs4072502 | 0.81[EUR][1000 genomes] |
rs4072503 | 0.81[EUR][1000 genomes] |
rs41332948 | 0.81[EUR][1000 genomes] |
rs4144063 | 0.81[EUR][1000 genomes] |
rs4144064 | 0.81[EUR][1000 genomes] |
rs4144067 | 0.81[EUR][1000 genomes] |
rs4587280 | 0.81[EUR][1000 genomes] |
rs5028265 | 0.84[AFR][1000 genomes] |
rs5028266 | 0.84[AFR][1000 genomes] |
rs55650796 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56205257 | 0.81[EUR][1000 genomes] |
rs56213942 | 0.81[EUR][1000 genomes] |
rs56232183 | 0.96[EUR][1000 genomes] |
rs56241442 | 0.81[EUR][1000 genomes] |
rs56247566 | 0.84[EUR][1000 genomes] |
rs56393952 | 0.81[EUR][1000 genomes] |
rs56806901 | 0.81[EUR][1000 genomes] |
rs56945649 | 0.80[AFR][1000 genomes] |
rs57401097 | 0.81[EUR][1000 genomes] |
rs58054917 | 0.96[EUR][1000 genomes] |
rs58077564 | 0.81[EUR][1000 genomes] |
rs58321909 | 0.81[EUR][1000 genomes] |
rs58433353 | 0.81[EUR][1000 genomes] |
rs58486673 | 0.81[EUR][1000 genomes] |
rs58553345 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs58635193 | 0.81[EUR][1000 genomes] |
rs59100514 | 0.81[EUR][1000 genomes] |
rs59243715 | 0.81[EUR][1000 genomes] |
rs60147095 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs60184691 | 0.81[EUR][1000 genomes] |
rs60560717 | 0.80[AFR][1000 genomes] |
rs60918397 | 0.81[EUR][1000 genomes] |
rs61171557 | 0.81[EUR][1000 genomes] |
rs61310674 | 0.81[EUR][1000 genomes] |
rs61562434 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs61602397 | 0.81[EUR][1000 genomes] |
rs61649354 | 0.81[EUR][1000 genomes] |
rs66501875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs66522605 | 0.81[EUR][1000 genomes] |
rs66591834 | 0.81[EUR][1000 genomes] |
rs66729625 | 0.81[EUR][1000 genomes] |
rs66763020 | 0.81[EUR][1000 genomes] |
rs66793444 | 0.81[EUR][1000 genomes] |
rs66898358 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs66909576 | 0.81[EUR][1000 genomes] |
rs67001204 | 0.81[EUR][1000 genomes] |
rs67040412 | 0.81[EUR][1000 genomes] |
rs67074321 | 0.81[EUR][1000 genomes] |
rs67081192 | 0.81[EUR][1000 genomes] |
rs67132562 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs67163301 | 0.96[EUR][1000 genomes] |
rs67187623 | 0.81[EUR][1000 genomes] |
rs67223065 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs67249859 | 0.81[EUR][1000 genomes] |
rs67298249 | 0.81[EUR][1000 genomes] |
rs67316911 | 0.81[EUR][1000 genomes] |
rs67331245 | 0.81[EUR][1000 genomes] |
rs67591654 | 0.84[AFR][1000 genomes] |
rs67744396 | 0.81[EUR][1000 genomes] |
rs67748204 | 0.81[EUR][1000 genomes] |
rs67764854 | 0.81[EUR][1000 genomes] |
rs67985903 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs68029531 | 0.81[EUR][1000 genomes] |
rs68110103 | 0.81[EUR][1000 genomes] |
rs68168969 | 0.81[EUR][1000 genomes] |
rs68179951 | 0.81[EUR][1000 genomes] |
rs6942708 | 0.84[AFR][1000 genomes] |
rs6944801 | 0.81[EUR][1000 genomes] |
rs6957156 | 0.84[AFR][1000 genomes] |
rs6963717 | 0.81[EUR][1000 genomes] |
rs6966994 | 0.81[EUR][1000 genomes] |
rs6968069 | 0.96[EUR][1000 genomes] |
rs6972440 | 0.96[EUR][1000 genomes] |
rs6973231 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6977997 | 0.81[EUR][1000 genomes] |
rs73094625 | 0.81[EUR][1000 genomes] |
rs73107574 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs73109382 | 0.81[EUR][1000 genomes] |
rs73109385 | 0.81[EUR][1000 genomes] |
rs73109401 | 0.81[EUR][1000 genomes] |
rs7357308 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7457791 | 0.81[EUR][1000 genomes] |
rs7778895 | 0.81[EUR][1000 genomes] |
rs7781149 | 0.81[EUR][1000 genomes] |
rs7781150 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7804139 | 0.81[EUR][1000 genomes] |
rs7807529 | 0.81[EUR][1000 genomes] |
rs9632787 | 0.84[AFR][1000 genomes] |
rs9632788 | 0.84[AFR][1000 genomes] |
rs9690617 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817336 | chr7:48238233-48563988 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv1022980 | chr7:48243227-48567060 | Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv538833 | chr7:48243227-48567060 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1022578 | chr7:48244414-48584664 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1023575 | chr7:48244414-48586685 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv1015183 | chr7:48244414-48588598 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1032221 | chr7:48302789-48546684 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv533811 | chr7:48313757-48482470 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv1015399 | chr7:48321542-48544359 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | esv2761325 | chr7:48409639-48557382 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | nsv888006 | chr7:48467581-48491825 | Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv888007 | chr7:48467581-48533508 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv524173 | chr7:48479620-48479836 | Strong transcription Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:48468000-48500000 | Weak transcription | Primary hematopoietic stem cells | blood |
2 | chr7:48469200-48480200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr7:48479400-48483400 | Strong transcription | Primary neutrophils fromperipheralblood | blood |