Variant report

Variant	rs17132335
Chromosome Location	chr7:48484265-48484266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10254742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256975	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10262407	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs10271606	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273249	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs10273640	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs10274174	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs10499682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10499683	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10499684	1.00[CEU][hapmap];0.81[JPT][hapmap];0.81[TSI][hapmap]
rs1109443	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11185608	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap]
rs11185609	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs12112361	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12113920	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap]
rs12113960	0.86[JPT][hapmap]
rs12669930	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12669976	0.96[EUR][1000 genomes]
rs12670340	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs12671073	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12672551	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12674031	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs12718266	0.80[AFR][1000 genomes]
rs1316349	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs1316821	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1317162	1.00[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs13233421	0.80[LWK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs13236501	0.84[AFR][1000 genomes]
rs13243091	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs13247279	0.84[AFR][1000 genomes]
rs13307295	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs1405920	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs1433506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433508	0.80[AFR][1000 genomes]
rs1433509	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs1527835	1.00[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1527839	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1527840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1609213	0.81[EUR][1000 genomes]
rs17092931	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[LWK][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs17132373	0.96[EUR][1000 genomes]
rs17132376	0.96[EUR][1000 genomes]
rs17132383	0.96[EUR][1000 genomes]
rs17132388	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs17132402	0.94[EUR][1000 genomes]
rs17132417	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17132425	1.00[JPT][hapmap]
rs17132439	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs17132443	0.81[EUR][1000 genomes]
rs17132460	0.81[EUR][1000 genomes]
rs17132491	0.81[EUR][1000 genomes]
rs1865194	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1918580	0.81[EUR][1000 genomes]
rs1918581	0.81[EUR][1000 genomes]
rs1918586	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1918587	0.81[EUR][1000 genomes]
rs1918588	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs1918589	0.81[EUR][1000 genomes]
rs1918594	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs1918595	0.81[EUR][1000 genomes]
rs1918596	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.81[EUR][1000 genomes]
rs1918597	0.81[EUR][1000 genomes]
rs1918602	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1918606	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1918608	0.81[EUR][1000 genomes]
rs1918613	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2141249	1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs2178086	0.81[EUR][1000 genomes]
rs2178087	0.81[EUR][1000 genomes]
rs2217710	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2222731	0.81[EUR][1000 genomes]
rs2362307	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28369084	0.84[AFR][1000 genomes]
rs28454544	0.80[AFR][1000 genomes]
rs28481588	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2885484	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs34541457	0.84[AFR][1000 genomes]
rs34563223	0.84[AFR][1000 genomes]
rs34691991	0.84[AFR][1000 genomes]
rs34832520	0.84[AFR][1000 genomes]
rs35754209	0.84[AFR][1000 genomes]
rs35972471	0.84[AFR][1000 genomes]
rs36035836	0.84[AFR][1000 genomes]
rs4072501	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs4072502	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs4072503	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs41332948	1.00[CEU][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs4144063	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs4144064	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs4144067	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs4587280	0.81[EUR][1000 genomes]
rs5028265	0.84[AFR][1000 genomes]
rs5028266	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs5028267	0.90[YRI][hapmap]
rs55650796	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56205257	0.81[EUR][1000 genomes]
rs56213942	0.81[EUR][1000 genomes]
rs56232183	0.96[EUR][1000 genomes]
rs56241442	0.81[EUR][1000 genomes]
rs56247566	0.84[EUR][1000 genomes]
rs56393952	0.81[EUR][1000 genomes]
rs56806901	0.81[EUR][1000 genomes]
rs56945649	0.80[AFR][1000 genomes]
rs57401097	0.81[EUR][1000 genomes]
rs58054917	0.96[EUR][1000 genomes]
rs58077564	0.81[EUR][1000 genomes]
rs58321909	0.81[EUR][1000 genomes]
rs58433353	0.81[EUR][1000 genomes]
rs58486673	0.81[EUR][1000 genomes]
rs58553345	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58635193	0.81[EUR][1000 genomes]
rs59100514	0.81[EUR][1000 genomes]
rs59243715	0.81[EUR][1000 genomes]
rs60147095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60184691	0.81[EUR][1000 genomes]
rs60560717	0.80[AFR][1000 genomes]
rs60918397	0.81[EUR][1000 genomes]
rs61171557	0.81[EUR][1000 genomes]
rs61310674	0.81[EUR][1000 genomes]
rs61562434	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61602397	0.81[EUR][1000 genomes]
rs61649354	0.81[EUR][1000 genomes]
rs6583456	0.86[JPT][hapmap]
rs66501875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66522605	0.81[EUR][1000 genomes]
rs66591834	0.81[EUR][1000 genomes]
rs66729625	0.81[EUR][1000 genomes]
rs66763020	0.81[EUR][1000 genomes]
rs66793444	0.81[EUR][1000 genomes]
rs66898358	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66909576	0.81[EUR][1000 genomes]
rs67001204	0.81[EUR][1000 genomes]
rs67040412	0.81[EUR][1000 genomes]
rs67074321	0.81[EUR][1000 genomes]
rs67081192	0.81[EUR][1000 genomes]
rs67132562	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67163301	0.96[EUR][1000 genomes]
rs67187623	0.81[EUR][1000 genomes]
rs67223065	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67249859	0.81[EUR][1000 genomes]
rs67298249	0.81[EUR][1000 genomes]
rs67316911	0.81[EUR][1000 genomes]
rs67331245	0.81[EUR][1000 genomes]
rs67591654	0.84[AFR][1000 genomes]
rs67744396	0.81[EUR][1000 genomes]
rs67748204	0.81[EUR][1000 genomes]
rs67764854	0.81[EUR][1000 genomes]
rs67985903	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs68029531	0.81[EUR][1000 genomes]
rs68110103	0.81[EUR][1000 genomes]
rs68168969	0.81[EUR][1000 genomes]
rs68179951	0.81[EUR][1000 genomes]
rs6942708	0.84[AFR][1000 genomes]
rs6944801	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs6957156	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs6963717	0.81[EUR][1000 genomes]
rs6966994	0.81[EUR][1000 genomes]
rs6968069	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs6972440	0.96[EUR][1000 genomes]
rs6973231	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6977997	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs73094625	0.81[EUR][1000 genomes]
rs73107574	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73109382	0.81[EUR][1000 genomes]
rs73109385	0.81[EUR][1000 genomes]
rs73109401	0.81[EUR][1000 genomes]
rs7357308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7457791	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs7776966	1.00[JPT][hapmap]
rs7778895	0.81[EUR][1000 genomes]
rs7781149	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs7781150	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7785069	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs7792728	1.00[JPT][hapmap]
rs7802150	0.81[TSI][hapmap]
rs7804139	0.81[EUR][1000 genomes]
rs7806480	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs7807529	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs875810	0.85[YRI][hapmap]
rs9632787	0.84[AFR][1000 genomes]
rs9632788	0.84[AFR][1000 genomes]
rs9690617	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv888006	chr7:48467581-48491825	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv888007	chr7:48467581-48533508	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48468000-48500000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48482800-48486400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:48484200-48488200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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