Variant report

Variant rs15109
Chromosome Location chr1:228336518-228336519
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228329000-228336800 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr1:228329000-228339400 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:228329000-228339600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:228329200-228337400 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:228329400-228336600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:228329400-228337600 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr1:228329400-228337600 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr1:228329400-228338200 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr1:228329600-228336800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:228329800-228336600 Weak transcription A549 lung
11 chr1:228330000-228337200 Genic enhancers Fetal Muscle Leg muscle
12 chr1:228330000-228337800 Genic enhancers Lung lung
13 chr1:228330600-228337200 Genic enhancers Fetal Muscle Trunk muscle
14 chr1:228331000-228338800 Weak transcription HSMMtube muscle
15 chr1:228331400-228341800 Weak transcription Psoas Muscle Psoas
16 chr1:228331600-228337000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:228331600-228337000 Weak transcription NH-A brain
18 chr1:228331600-228341000 Genic enhancers Fetal Thymus thymus
19 chr1:228331800-228336600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:228331800-228336800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:228332000-228336600 Weak transcription Fetal Heart heart
22 chr1:228332000-228337000 Genic enhancers Primary T cells fromperipheralblood blood
23 chr1:228332200-228337400 Strong transcription Dnd41 blood
24 chr1:228332400-228337200 Genic enhancers Esophagus oesophagus
25 chr1:228332400-228339400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:228332600-228336800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:228332600-228337600 Weak transcription Small Intestine intestine
28 chr1:228332600-228338200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:228332800-228337800 Strong transcription Primary hematopoietic stem cells short term culture blood
30 chr1:228332800-228338200 Strong transcription Primary neutrophils fromperipheralblood blood
31 chr1:228332800-228339000 Genic enhancers Breast Myoepithelial Primary Cells Breast
32 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr1:228333000-228336600 Strong transcription Colonic Mucosa Colon
34 chr1:228333000-228336600 Strong transcription Rectal Mucosa Donor 29 rectum
35 chr1:228333000-228336800 Strong transcription Sigmoid Colon Sigmoid Colon
36 chr1:228333000-228336800 Strong transcription Monocytes-CD14+_RO01746 blood
37 chr1:228333000-228337000 Strong transcription Primary monocytes fromperipheralblood blood
38 chr1:228333000-228337200 Strong transcription Liver Liver
39 chr1:228333000-228337400 Strong transcription Brain Germinal Matrix brain
40 chr1:228333000-228337800 Strong transcription Primary T helper cells PMA-I stimulated --
41 chr1:228333000-228338000 Strong transcription Primary T helper naive cells fromperipheralblood blood
42 chr1:228333200-228336600 Strong transcription Duodenum Mucosa Duodenum
43 chr1:228333200-228336800 Strong transcription Rectal Smooth Muscle rectum
44 chr1:228333200-228337000 Strong transcription Primary T helper cells fromperipheralblood blood
45 chr1:228333200-228337200 Strong transcription Primary B cells from peripheral blood blood
46 chr1:228333200-228337400 Genic enhancers Skeletal Muscle Male skeletal muscle
47 chr1:228333200-228337800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:228333200-228337800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:228333200-228337800 Strong transcription Fetal Brain Female brain
50 chr1:228333200-228338000 Genic enhancers Right Ventricle heart

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