The 2.0 version of rSNPBase

Variant report

Variant rs56285667
Chromosome Location chr1:228330181-228330182
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228328200-228330200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
2 chr1:228328400-228330400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
3 chr1:228328400-228330400 Flanking Active TSS Brain Cingulate Gyrus brain
4 chr1:228328400-228330400 Flanking Active TSS Brain Inferior Temporal Lobe brain
5 chr1:228328400-228330600 Flanking Active TSS Adipose Nuclei Adipose
6 chr1:228328600-228330200 Flanking Active TSS Colonic Mucosa Colon
7 chr1:228328600-228330400 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
8 chr1:228328600-228330400 Flanking Active TSS Rectal Smooth Muscle rectum
9 chr1:228328600-228330800 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
10 chr1:228328800-228330200 Flanking Active TSS Right Ventricle heart
11 chr1:228328800-228330800 Flanking Active TSS Duodenum Mucosa Duodenum
12 chr1:228328800-228330800 Transcr. at gene 5' and 3' Dnd41 blood
13 chr1:228328800-228331000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:228328800-228332000 Enhancers Fetal Brain Male brain
15 chr1:228329000-228330400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:228329000-228330400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
17 chr1:228329000-228330400 Flanking Active TSS Osteobl bone
18 chr1:228329000-228330800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
19 chr1:228329000-228331000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
20 chr1:228329000-228331000 Flanking Active TSS Thymus Thymus
21 chr1:228329000-228332000 Enhancers Fetal Heart heart
22 chr1:228329000-228332200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:228329000-228336800 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr1:228329000-228339400 Weak transcription H9 Cell Line embryonic stem cell
25 chr1:228329000-228339600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:228329200-228330200 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
27 chr1:228329200-228330200 Transcr. at gene 5' and 3' NHEK skin
28 chr1:228329200-228330400 Flanking Active TSS Brain Hippocampus Middle brain
29 chr1:228329200-228330800 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:228329200-228331600 Transcr. at gene 5' and 3' Fetal Thymus thymus
31 chr1:228329200-228331800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:228329200-228332600 Enhancers Placenta Amnion Placenta Amnion
33 chr1:228329200-228337400 Weak transcription iPS-20b Cell Line embryonic stem cell
34 chr1:228329400-228330200 Transcr. at gene 5' and 3' Esophagus oesophagus
35 chr1:228329400-228330200 Transcr. at gene 5' and 3' Rectal Mucosa Donor 29 rectum
36 chr1:228329400-228330200 Transcr. at gene 5' and 3' Stomach Smooth Muscle stomach
37 chr1:228329400-228330200 Transcr. at gene 5' and 3' NHLF lung
38 chr1:228329400-228330400 Genic enhancers Primary monocytes fromperipheralblood blood
39 chr1:228329400-228330400 Transcr. at gene 5' and 3' Primary mononuclear cells fromperipheralblood Blood
40 chr1:228329400-228330400 Flanking Active TSS HSMMtube muscle
41 chr1:228329400-228330400 Flanking Active TSS NHDF-Ad bronchial
42 chr1:228329400-228330600 Enhancers Cortex derived primary cultured neurospheres brain
43 chr1:228329400-228330600 Enhancers Small Intestine intestine
44 chr1:228329400-228330800 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:228329400-228330800 Genic enhancers Primary B cells from peripheral blood blood
46 chr1:228329400-228331000 Genic enhancers Fetal Stomach stomach
47 chr1:228329400-228331000 Flanking Active TSS HMEC breast
48 chr1:228329400-228331200 Flanking Active TSS HepG2 liver
49 chr1:228329400-228333200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:228329400-228333800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015