The 2.0 version of rSNPBase

Variant report

Variant rs74141002
Chromosome Location chr1:228337257-228337258
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228329000-228339400 Weak transcription H9 Cell Line embryonic stem cell
2 chr1:228329000-228339600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:228329200-228337400 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr1:228329400-228337600 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr1:228329400-228337600 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr1:228329400-228338200 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr1:228330000-228337800 Genic enhancers Lung lung
8 chr1:228331000-228338800 Weak transcription HSMMtube muscle
9 chr1:228331400-228341800 Weak transcription Psoas Muscle Psoas
10 chr1:228331600-228341000 Genic enhancers Fetal Thymus thymus
11 chr1:228332200-228337400 Strong transcription Dnd41 blood
12 chr1:228332400-228339400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:228332600-228337600 Weak transcription Small Intestine intestine
14 chr1:228332600-228338200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:228332800-228337800 Strong transcription Primary hematopoietic stem cells short term culture blood
16 chr1:228332800-228338200 Strong transcription Primary neutrophils fromperipheralblood blood
17 chr1:228332800-228339000 Genic enhancers Breast Myoepithelial Primary Cells Breast
18 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr1:228333000-228337400 Strong transcription Brain Germinal Matrix brain
20 chr1:228333000-228337800 Strong transcription Primary T helper cells PMA-I stimulated --
21 chr1:228333000-228338000 Strong transcription Primary T helper naive cells fromperipheralblood blood
22 chr1:228333200-228337400 Genic enhancers Skeletal Muscle Male skeletal muscle
23 chr1:228333200-228337800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:228333200-228337800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:228333200-228337800 Strong transcription Fetal Brain Female brain
26 chr1:228333200-228338000 Genic enhancers Right Ventricle heart
27 chr1:228333200-228342200 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr1:228333200-228344600 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr1:228333400-228338200 Strong transcription Primary T regulatory cells fromperipheralblood blood
30 chr1:228333600-228338200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:228333800-228337800 Strong transcription Thymus Thymus
32 chr1:228333800-228350400 Weak transcription Primary B cells from cord blood blood
33 chr1:228334200-228340000 Genic enhancers Spleen Spleen
34 chr1:228334800-228338800 Weak transcription Aorta Aorta
35 chr1:228335600-228338000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
36 chr1:228335600-228338400 Weak transcription GM12878-XiMat blood
37 chr1:228335800-228337400 Genic enhancers Fetal Stomach stomach
38 chr1:228335800-228337400 Genic enhancers NHLF lung
39 chr1:228335800-228338000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:228335800-228338200 Genic enhancers Placenta Placenta
41 chr1:228335800-228339600 Enhancers Right Atrium heart
42 chr1:228335800-228339800 Enhancers Fetal Lung lung
43 chr1:228336000-228337400 Genic enhancers Brain Dorsolateral Prefrontal Cortex brain
44 chr1:228336000-228338000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
45 chr1:228336000-228339000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
46 chr1:228336000-228342000 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr1:228336200-228337400 Enhancers Colon Smooth Muscle Colon
48 chr1:228336200-228339400 Genic enhancers Muscle Satellite Cultured Cells --
49 chr1:228336400-228338000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:228336400-228339200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015