Variant report

Variant	rs16858828
Chromosome Location	chr3:111630787-111630788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1282951	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080181	1.00[ASN][1000 genomes]
rs13083727	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492619	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2015457	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584013	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280973	1.00[ASN][1000 genomes]
rs34758094	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058055	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273140	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398004	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423545	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35475895	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831430	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36133898	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054847	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438023	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515458	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796403	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802641	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315891	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[ASN][1000 genomes]
rs7626033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653069	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774856	0.88[MEX][hapmap]
rs774857	0.88[MEX][hapmap]
rs774861	0.88[MEX][hapmap]
rs9811962	0.87[ASN][1000 genomes]
rs9834691	1.00[ASN][1000 genomes]
rs9849340	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
2	chr3:111604000-111632200	Weak transcription	Gastric	stomach
3	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:111617600-111631800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
7	chr3:111621800-111632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:111623400-111641200	Weak transcription	Lung	lung
9	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:111624600-111632800	Enhancers	Fetal Heart	heart
11	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:111626400-111632200	Weak transcription	HepG2	liver
13	chr3:111626600-111632000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:111627800-111632000	Weak transcription	Fetal Stomach	stomach
15	chr3:111628400-111632200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
17	chr3:111628600-111632000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:111628600-111632200	Enhancers	A549	lung
19	chr3:111628800-111630800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:111628800-111631000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:111628800-111631000	Enhancers	NH-A	brain
22	chr3:111628800-111631400	Enhancers	HMEC	breast
23	chr3:111629000-111631200	Enhancers	Adipose Nuclei	Adipose
24	chr3:111629200-111630800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:111629200-111630800	Enhancers	NHDF-Ad	bronchial
26	chr3:111629200-111631000	Enhancers	Placenta Amnion	Placenta Amnion
27	chr3:111629200-111631000	Enhancers	HSMMtube	muscle
28	chr3:111629200-111631000	Enhancers	NHLF	lung
29	chr3:111629200-111631200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:111629200-111631200	Enhancers	Stomach Smooth Muscle	stomach
31	chr3:111629400-111630800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:111629400-111631000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr3:111629400-111631000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:111629400-111631200	Enhancers	Colon Smooth Muscle	Colon
35	chr3:111629400-111636200	Weak transcription	Psoas Muscle	Psoas
36	chr3:111629600-111631000	Enhancers	Fetal Brain Male	brain
37	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:111629800-111630800	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr3:111629800-111631800	Weak transcription	Liver	Liver
40	chr3:111629800-111631800	Weak transcription	Placenta	Placenta
41	chr3:111629800-111632200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
43	chr3:111630000-111632400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:111630000-111634200	Strong transcription	NHEK	skin
45	chr3:111630200-111630800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:111630200-111631000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:111630200-111631000	Enhancers	Fetal Intestine Small	intestine
48	chr3:111630200-111637400	Weak transcription	Aorta	Aorta
49	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:111630400-111630800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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