Variant report

Variant	rs35273140
Chromosome Location	chr3:111664559-111664560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111664159..111666213-chr3:111682132..111684444,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1282951	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062225	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080181	1.00[ASN][1000 genomes]
rs13083727	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858828	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858904	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492619	1.00[ASN][1000 genomes]
rs2015457	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137897	0.80[EUR][1000 genomes]
rs2272289	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584013	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280973	1.00[ASN][1000 genomes]
rs34614600	0.82[EUR][1000 genomes]
rs34758094	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058055	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398004	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423545	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35475895	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831430	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36002857	0.80[EUR][1000 genomes]
rs36133898	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054847	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438023	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796403	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802641	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315891	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[ASN][1000 genomes]
rs7626033	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626336	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634410	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643903	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653069	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811962	0.87[ASN][1000 genomes]
rs9834691	1.00[ASN][1000 genomes]
rs9849340	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111635200-111665600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:111642200-111674400	Weak transcription	Lung	lung
7	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
8	chr3:111645400-111665400	Weak transcription	Right Atrium	heart
9	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:111646400-111671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
12	chr3:111650200-111670000	Strong transcription	Liver	Liver
13	chr3:111652200-111665600	Weak transcription	Small Intestine	intestine
14	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
17	chr3:111654800-111667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:111656600-111672000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:111656600-111673200	Weak transcription	Stomach Mucosa	stomach
20	chr3:111656600-111674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:111657000-111665600	Strong transcription	NH-A	brain
23	chr3:111657000-111666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr3:111657200-111665600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:111657200-111672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:111657400-111665800	Strong transcription	HSMM	muscle
28	chr3:111657400-111673000	Strong transcription	Osteobl	bone
29	chr3:111657800-111674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:111658000-111664600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:111658000-111673000	Strong transcription	Adipose Nuclei	Adipose
32	chr3:111658000-111673200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:111658200-111669800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:111658600-111697400	Weak transcription	Gastric	stomach
35	chr3:111658800-111672600	Weak transcription	Fetal Kidney	kidney
36	chr3:111658800-111685800	Weak transcription	HepG2	liver
37	chr3:111660200-111671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:111660400-111665400	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:111660400-111665400	Weak transcription	Hela-S3	cervix
40	chr3:111660400-111667600	Weak transcription	HSMMtube	muscle
41	chr3:111660400-111671000	Weak transcription	Fetal Heart	heart
42	chr3:111660400-111672400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:111660600-111665600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr3:111660600-111667400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:111660600-111672400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:111660800-111671000	Weak transcription	Fetal Stomach	stomach
47	chr3:111660800-111672000	Weak transcription	Fetal Intestine Large	intestine
48	chr3:111661000-111667800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:111661000-111676000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr3:111661400-111671800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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