Variant report

Variant	rs7626033
Chromosome Location	chr3:111669282-111669283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111669146-111669775	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1282951	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080181	1.00[ASN][1000 genomes]
rs13083727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858828	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492619	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2015457	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584013	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280973	1.00[ASN][1000 genomes]
rs34614600	0.80[EUR][1000 genomes]
rs34758094	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058055	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273140	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398004	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423545	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35475895	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831430	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36133898	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438023	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515458	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796403	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802641	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315891	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[ASN][1000 genomes]
rs73232014	0.81[AMR][1000 genomes]
rs7626336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653069	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811962	0.87[ASN][1000 genomes]
rs9834691	1.00[ASN][1000 genomes]
rs9849340	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:111642200-111674400	Weak transcription	Lung	lung
6	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
7	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:111646400-111671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
10	chr3:111650200-111670000	Strong transcription	Liver	Liver
11	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
14	chr3:111656600-111672000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:111656600-111673200	Weak transcription	Stomach Mucosa	stomach
16	chr3:111656600-111674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:111657200-111672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:111657400-111673000	Strong transcription	Osteobl	bone
21	chr3:111657800-111674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:111658000-111673000	Strong transcription	Adipose Nuclei	Adipose
23	chr3:111658000-111673200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:111658200-111669800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:111658600-111697400	Weak transcription	Gastric	stomach
26	chr3:111658800-111672600	Weak transcription	Fetal Kidney	kidney
27	chr3:111658800-111685800	Weak transcription	HepG2	liver
28	chr3:111660200-111671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:111660400-111671000	Weak transcription	Fetal Heart	heart
30	chr3:111660400-111672400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:111660600-111672400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:111660800-111671000	Weak transcription	Fetal Stomach	stomach
33	chr3:111660800-111672000	Weak transcription	Fetal Intestine Large	intestine
34	chr3:111661000-111676000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:111661400-111671800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:111661600-111689800	Weak transcription	Ovary	ovary
37	chr3:111662000-111671000	Weak transcription	Pancreas	Pancrea
38	chr3:111662000-111672600	Weak transcription	Aorta	Aorta
39	chr3:111663000-111672200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr3:111663000-111681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:111663200-111671000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:111663200-111671800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:111663200-111675200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:111663400-111671400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:111663800-111671200	Strong transcription	A549	lung
46	chr3:111663800-111681200	Strong transcription	NHEK	skin
47	chr3:111664000-111673400	Strong transcription	HMEC	breast
48	chr3:111664600-111672600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:111664800-111671000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:111664800-111672400	Weak transcription	Right Ventricle	heart

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