Variant report

Variant	rs34758094
Chromosome Location	chr3:111673951-111673952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr3:111673269-111673959	SK-N-SH	brain:	n/a	n/a
2	NFIC	chr3:111673291-111673978	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr3:111673274-111674081	SK-N-SH	brain:	n/a	chr3:111673839-111673856
4	TCF12	chr3:111673263-111673977	SK-N-SH	brain:	n/a	n/a
5	TCF12	chr3:111673271-111674090	SK-N-SH	brain:	n/a	n/a
6	EP300	chr3:111673184-111673959	SK-N-SH	brain:	n/a	n/a
7	PBX3	chr3:111673398-111673967	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111673398..111675283-chr3:111676915..111679475,3	MCF-7	breast:

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1282951	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062225	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080181	1.00[ASN][1000 genomes]
rs13083727	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858828	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858904	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492619	1.00[ASN][1000 genomes]
rs2015457	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272289	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584013	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280973	1.00[ASN][1000 genomes]
rs34614600	0.80[EUR][1000 genomes]
rs35058055	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273140	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398004	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423545	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35475895	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36133898	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438023	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515458	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796403	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802641	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315891	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[ASN][1000 genomes]
rs73232014	0.81[AMR][1000 genomes]
rs7626033	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634410	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643903	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653069	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811962	0.87[ASN][1000 genomes]
rs9834691	1.00[ASN][1000 genomes]
rs9849340	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111639200-111675400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:111642200-111674400	Weak transcription	Lung	lung
4	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
5	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:111648600-111674800	Weak transcription	Psoas Muscle	Psoas
7	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
10	chr3:111656600-111674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:111656600-111679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:111657800-111674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:111658600-111697400	Weak transcription	Gastric	stomach
15	chr3:111658800-111685800	Weak transcription	HepG2	liver
16	chr3:111661000-111676000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:111661600-111689800	Weak transcription	Ovary	ovary
18	chr3:111663000-111681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:111663200-111675200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:111663800-111681200	Strong transcription	NHEK	skin
21	chr3:111665800-111675400	Weak transcription	Right Atrium	heart
22	chr3:111666600-111675200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
24	chr3:111667000-111675400	Strong transcription	HSMM	muscle
25	chr3:111667200-111675200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:111670800-111685000	Strong transcription	Liver	Liver
27	chr3:111671000-111674400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:111671000-111681800	Strong transcription	NH-A	brain
29	chr3:111671200-111680800	Weak transcription	A549	lung
30	chr3:111671400-111674600	Strong transcription	HSMMtube	muscle
31	chr3:111671400-111675000	Strong transcription	Fetal Muscle Leg	muscle
32	chr3:111671400-111675200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:111672000-111675400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:111672200-111674000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:111672600-111674000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr3:111672800-111674600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:111672800-111674800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:111672800-111677800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:111672800-111677800	Strong transcription	Left Ventricle	heart
40	chr3:111672800-111677800	Weak transcription	Right Ventricle	heart
41	chr3:111672800-111686000	Weak transcription	Fetal Intestine Small	intestine
42	chr3:111673000-111674000	Genic enhancers	Adipose Nuclei	Adipose
43	chr3:111673000-111675600	Enhancers	NHDF-Ad	bronchial
44	chr3:111673000-111675800	Weak transcription	Fetal Lung	lung
45	chr3:111673000-111677800	Weak transcription	Aorta	Aorta
46	chr3:111673000-111677800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:111673000-111680000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:111673000-111680600	Weak transcription	Fetal Intestine Large	intestine
49	chr3:111673000-111681800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:111673000-111682000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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