Variant report

Variant	rs35475895
Chromosome Location	chr3:111616090-111616091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLCXD2-2	chr3:111615806-111619675	NONHSAT091152

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1282951	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062225	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080181	1.00[ASN][1000 genomes]
rs13083727	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858904	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492619	1.00[ASN][1000 genomes]
rs2015457	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272289	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280973	1.00[ASN][1000 genomes]
rs34758094	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058055	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273140	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35398004	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423545	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831430	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36133898	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054847	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438023	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515458	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796403	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802641	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315891	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[ASN][1000 genomes]
rs7626033	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626336	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634410	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643903	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653069	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811962	0.87[ASN][1000 genomes]
rs9834691	1.00[ASN][1000 genomes]
rs9849340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
2	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
3	chr3:111601600-111620400	Weak transcription	Fetal Lung	lung
4	chr3:111601800-111620600	Weak transcription	NHDF-Ad	bronchial
5	chr3:111604000-111632200	Weak transcription	Gastric	stomach
6	chr3:111604200-111617400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:111604200-111617600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:111604400-111617200	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:111604400-111617400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:111604400-111618000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:111604400-111618200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:111604400-111620600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:111604400-111621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:111604400-111622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
16	chr3:111604400-111629400	Weak transcription	Ovary	ovary
17	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:111604600-111617400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:111604800-111621600	Weak transcription	NHLF	lung
20	chr3:111604800-111622000	Weak transcription	Adipose Nuclei	Adipose
21	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:111605000-111620400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:111605200-111617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:111606400-111617000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:111606400-111618400	Weak transcription	Placenta	Placenta
27	chr3:111609200-111618600	Weak transcription	Hela-S3	cervix
28	chr3:111609400-111617400	Weak transcription	HSMM	muscle
29	chr3:111609400-111622400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:111609600-111617200	Weak transcription	Liver	Liver
31	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
32	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:111610200-111617400	Weak transcription	HMEC	breast
35	chr3:111610200-111621600	Weak transcription	Left Ventricle	heart
36	chr3:111610200-111622200	Weak transcription	Lung	lung
37	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
38	chr3:111611000-111617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:111611000-111622000	Weak transcription	Right Ventricle	heart
40	chr3:111612400-111617600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:111612400-111617600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:111612400-111620400	Weak transcription	NH-A	brain
43	chr3:111613800-111620000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:111614000-111617200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:111614400-111618800	Strong transcription	NHEK	skin
46	chr3:111614600-111619800	Weak transcription	HUVEC	blood vessel
47	chr3:111615600-111616200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:111615600-111616400	Enhancers	A549	lung
49	chr3:111615600-111619400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:111615600-111619400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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