Variant report

Variant	rs35398004
Chromosome Location	chr3:111634432-111634433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111633731..111635753-chr3:111641822..111644588,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1282951	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062225	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080181	1.00[ASN][1000 genomes]
rs13083727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858904	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492619	1.00[ASN][1000 genomes]
rs2015457	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137897	0.90[AFR][1000 genomes]
rs2272289	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584013	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34280973	1.00[ASN][1000 genomes]
rs34758094	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058055	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273140	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35423545	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35475895	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831430	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36133898	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054847	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438023	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66515458	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796403	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802641	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315891	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[ASN][1000 genomes]
rs7626033	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626336	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634410	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643903	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653069	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811962	0.87[ASN][1000 genomes]
rs9834691	1.00[ASN][1000 genomes]
rs9849340	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111620000-111643200	Weak transcription	Esophagus	oesophagus
2	chr3:111623400-111641200	Weak transcription	Lung	lung
3	chr3:111623800-111640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:111624600-111643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:111628400-111641600	Weak transcription	Spleen	Spleen
6	chr3:111629400-111636200	Weak transcription	Psoas Muscle	Psoas
7	chr3:111629600-111642800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:111629800-111642800	Weak transcription	Stomach Mucosa	stomach
9	chr3:111630200-111637400	Weak transcription	Aorta	Aorta
10	chr3:111630200-111641400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:111630400-111634800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:111630600-111634800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:111630600-111634800	Weak transcription	Small Intestine	intestine
14	chr3:111630600-111635600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:111630600-111637000	Weak transcription	Fetal Lung	lung
16	chr3:111630600-111637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:111630600-111642400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:111630600-111642800	Weak transcription	Pancreas	Pancrea
19	chr3:111630800-111637000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr3:111630800-111645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:111631000-111637200	Weak transcription	Fetal Intestine Large	intestine
22	chr3:111631000-111639200	Weak transcription	Fetal Brain Male	brain
23	chr3:111631000-111672000	Weak transcription	Fetal Intestine Small	intestine
24	chr3:111631000-111673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:111631600-111635000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:111631800-111634600	Strong transcription	HMEC	breast
27	chr3:111631800-111635800	Strong transcription	Osteobl	bone
28	chr3:111631800-111636200	Strong transcription	Liver	Liver
29	chr3:111631800-111644800	Strong transcription	Placenta	Placenta
30	chr3:111632000-111634600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:111632000-111642600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:111632000-111643400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:111632200-111634800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:111632200-111635000	Strong transcription	Adipose Nuclei	Adipose
35	chr3:111632200-111635200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr3:111632200-111647000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:111632400-111636000	Weak transcription	HSMMtube	muscle
38	chr3:111632400-111639200	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr3:111632600-111634600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:111632600-111634600	Strong transcription	NH-A	brain
41	chr3:111632600-111635000	Strong transcription	HSMM	muscle
42	chr3:111632600-111635400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:111632600-111636200	Weak transcription	Colon Smooth Muscle	Colon
44	chr3:111632600-111637400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:111632600-111637600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:111632800-111634600	Weak transcription	Primary B cells from cord blood	blood
47	chr3:111632800-111634800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:111632800-111635200	Weak transcription	Fetal Heart	heart
49	chr3:111632800-111637000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr3:111632800-111637400	Weak transcription	Gastric	stomach

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