The 2.0 version of rSNPBase

Variant report

Variant rs17492619
Chromosome Location chr3:111671794-111671795
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111631000-111672000 Weak transcription Fetal Intestine Small intestine
2 chr3:111631000-111673400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:111637200-111690600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr3:111639200-111675400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr3:111642200-111674400 Weak transcription Lung lung
6 chr3:111642200-111690400 Weak transcription Spleen Spleen
7 chr3:111645400-111689600 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr3:111648600-111674800 Weak transcription Psoas Muscle Psoas
9 chr3:111652400-111685800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr3:111653000-111686200 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr3:111654400-111695000 Strong transcription Placenta Placenta
12 chr3:111656600-111672000 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr3:111656600-111673200 Weak transcription Stomach Mucosa stomach
14 chr3:111656600-111674600 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr3:111656600-111679200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr3:111657200-111672600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr3:111657200-111682000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr3:111657400-111673000 Strong transcription Osteobl bone
19 chr3:111657800-111674600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr3:111658000-111673000 Strong transcription Adipose Nuclei Adipose
21 chr3:111658000-111673200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr3:111658600-111697400 Weak transcription Gastric stomach
23 chr3:111658800-111672600 Weak transcription Fetal Kidney kidney
24 chr3:111658800-111685800 Weak transcription HepG2 liver
25 chr3:111660400-111672400 Weak transcription HUES48 Cell Line embryonic stem cell
26 chr3:111660600-111672400 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr3:111660800-111672000 Weak transcription Fetal Intestine Large intestine
28 chr3:111661000-111676000 Weak transcription Duodenum Mucosa Duodenum
29 chr3:111661400-111671800 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr3:111661600-111689800 Weak transcription Ovary ovary
31 chr3:111662000-111672600 Weak transcription Aorta Aorta
32 chr3:111663000-111672200 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr3:111663000-111681400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr3:111663200-111671800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr3:111663200-111675200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr3:111663800-111681200 Strong transcription NHEK skin
37 chr3:111664000-111673400 Strong transcription HMEC breast
38 chr3:111664600-111672600 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr3:111664800-111672400 Weak transcription Right Ventricle heart
40 chr3:111665800-111675400 Weak transcription Right Atrium heart
41 chr3:111666000-111672400 Weak transcription Rectal Smooth Muscle rectum
42 chr3:111666600-111675200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr3:111666600-111697400 Weak transcription Esophagus oesophagus
44 chr3:111667000-111675400 Strong transcription HSMM muscle
45 chr3:111667200-111675200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr3:111667800-111672400 Weak transcription H9 Cell Line embryonic stem cell
47 chr3:111668000-111671800 Weak transcription NHLF lung
48 chr3:111668000-111672000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr3:111668000-111672400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:111669000-111672400 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015