Variant report
| Variant | rs16872057 |
|---|---|
| Chromosome Location | chr6:11913021-11913022 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:11908909..11912016-chr6:11912838..11916318,3 | K562 | blood: | |
| 2 | chr6:11908210..11909975-chr6:11910502..11913371,2 | K562 | blood: | |
| 3 | chr6:11908584..11910107-chr6:11912503..11915052,2 | MCF-7 | breast: | |
| 4 | chr6:11658704..11660656-chr6:11912465..11915132,2 | K562 | blood: | |
| 5 | chr6:11911981..11914460-chr6:11917367..11919083,2 | K562 | blood: | |
| 6 | chr6:11911583..11913780-chr6:11914644..11916287,2 | K562 | blood: | |
| 7 | chr6:11700330..11700838-chr6:11912516..11913089,2 | MCF-7 | breast: | |
| 8 | chr6:11911731..11914610-chr6:11928299..11930986,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs17486670 | 0.94[AMR][1000 genomes] |
| rs17486782 | 0.94[AMR][1000 genomes] |
| rs17676319 | 0.94[AMR][1000 genomes] |
| rs2024579 | 0.94[AMR][1000 genomes] |
| rs55718735 | 0.94[AMR][1000 genomes] |
| rs55875423 | 0.94[AMR][1000 genomes] |
| rs55911725 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs55964029 | 0.92[AFR][1000 genomes] |
| rs56204496 | 0.94[AMR][1000 genomes] |
| rs56209525 | 0.94[AMR][1000 genomes] |
| rs56412238 | 0.85[AFR][1000 genomes] |
| rs56764416 | 0.96[EUR][1000 genomes] |
| rs58026118 | 0.94[AMR][1000 genomes] |
| rs58086722 | 0.94[AMR][1000 genomes] |
| rs58221347 | 0.83[AMR][1000 genomes] |
| rs59206097 | 0.85[AFR][1000 genomes] |
| rs59592071 | 0.94[AMR][1000 genomes] |
| rs60552066 | 0.85[AFR][1000 genomes] |
| rs62395405 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs66614912 | 0.94[AMR][1000 genomes] |
| rs66708680 | 0.94[AMR][1000 genomes] |
| rs66720565 | 0.94[AMR][1000 genomes] |
| rs66964129 | 0.94[AMR][1000 genomes] |
| rs67843209 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs68009879 | 0.94[AMR][1000 genomes] |
| rs68019130 | 0.94[AMR][1000 genomes] |
| rs72826027 | 0.83[AFR][1000 genomes] |
| rs742750 | 0.88[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs876829 | 0.88[CEU][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11910600-11918000 | Weak transcription | Placenta Amnion | Placenta Amnion |
