Variant report

Variant	rs68019130
Chromosome Location	chr6:11937374-11937375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11936085..11938570-chr6:12004047..12005974,2	MCF-7	breast:
2	chr6:11930465..11936991-chr6:11937118..11940104,9	K562	blood:
3	chr6:11935152..11937413-chr6:11941922..11944210,2	K562	blood:
4	chr6:11936452..11938325-chr6:12011530..12013078,2	K562	blood:
5	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16872057	0.94[AMR][1000 genomes]
rs16872190	1.00[ASN][1000 genomes]
rs17486670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17486782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676414	0.82[EUR][1000 genomes]
rs2024579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273100	1.00[ASN][1000 genomes]
rs55698720	1.00[ASN][1000 genomes]
rs55706944	1.00[ASN][1000 genomes]
rs55718735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760539	1.00[ASN][1000 genomes]
rs55797398	1.00[ASN][1000 genomes]
rs55819840	1.00[ASN][1000 genomes]
rs55839618	1.00[AFR][1000 genomes]
rs55875423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55911725	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55964029	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56050214	1.00[ASN][1000 genomes]
rs56087670	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56115353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56138551	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56204496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209525	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294425	1.00[ASN][1000 genomes]
rs56321224	1.00[ASN][1000 genomes]
rs56412238	1.00[ASN][1000 genomes]
rs56764416	1.00[ASN][1000 genomes]
rs57774273	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58026118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58086722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58221347	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58831065	1.00[ASN][1000 genomes]
rs59206097	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59592071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60200272	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60552066	1.00[ASN][1000 genomes]
rs61227873	1.00[ASN][1000 genomes]
rs62395405	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6458056	1.00[ASN][1000 genomes]
rs66530314	1.00[ASN][1000 genomes]
rs66614912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66708680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66720565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727286	1.00[ASN][1000 genomes]
rs66964129	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67170588	1.00[ASN][1000 genomes]
rs67757013	1.00[ASN][1000 genomes]
rs67843209	1.00[ASN][1000 genomes]
rs68009879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916070	1.00[ASN][1000 genomes]
rs72826009	1.00[ASN][1000 genomes]
rs72826011	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826025	1.00[ASN][1000 genomes]
rs72826027	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826092	1.00[ASN][1000 genomes]
rs742750	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs876829	1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
2	chr6:11933600-11938400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:11933800-11938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11936000-11938400	Weak transcription	Liver	Liver
5	chr6:11936600-11938600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:11936800-11937600	Weak transcription	K562	blood

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