Variant report

Variant	rs742750
Chromosome Location	chr6:11919738-11919739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11917193..11921294-chr6:12011034..12015671,5	K562	blood:
2	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
3	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
4	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
5	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
6	chr6:11918788..11920525-chr6:12013699..12015737,2	K562	blood:
7	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs16872057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16872190	1.00[ASN][1000 genomes]
rs17486670	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17486782	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17676319	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2024579	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41273100	1.00[ASN][1000 genomes]
rs55698720	1.00[ASN][1000 genomes]
rs55706944	1.00[ASN][1000 genomes]
rs55718735	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55760539	1.00[ASN][1000 genomes]
rs55797398	1.00[ASN][1000 genomes]
rs55819840	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55839618	0.91[AFR][1000 genomes]
rs55875423	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55911725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55964029	1.00[ASN][1000 genomes]
rs56050214	1.00[ASN][1000 genomes]
rs56087670	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56115353	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56138551	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56204496	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56209525	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56294425	1.00[ASN][1000 genomes]
rs56321224	1.00[ASN][1000 genomes]
rs56412238	1.00[ASN][1000 genomes]
rs56764416	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57774273	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58026118	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58086722	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58221347	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58831065	1.00[ASN][1000 genomes]
rs59206097	1.00[ASN][1000 genomes]
rs59592071	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60200272	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60552066	1.00[ASN][1000 genomes]
rs61227873	1.00[ASN][1000 genomes]
rs62395405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458056	1.00[ASN][1000 genomes]
rs66530314	1.00[ASN][1000 genomes]
rs66614912	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66708680	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66720565	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66727286	1.00[ASN][1000 genomes]
rs66964129	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67170588	1.00[ASN][1000 genomes]
rs67757013	1.00[ASN][1000 genomes]
rs67843209	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68009879	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68019130	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6916070	1.00[ASN][1000 genomes]
rs72826009	1.00[ASN][1000 genomes]
rs72826011	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826025	1.00[ASN][1000 genomes]
rs72826027	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs876829	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11917600-11921200	Weak transcription	Right Atrium	heart
2	chr6:11918000-11919800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:11918000-11919800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:11918000-11919800	Enhancers	Fetal Intestine Large	intestine
5	chr6:11918000-11919800	Enhancers	Fetal Muscle Leg	muscle
6	chr6:11918000-11919800	Enhancers	HSMM	muscle
7	chr6:11918000-11919800	Enhancers	Osteobl	bone
8	chr6:11918000-11920200	Enhancers	Fetal Stomach	stomach
9	chr6:11918000-11920200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:11918200-11919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:11918200-11919800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:11918200-11919800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:11918200-11919800	Enhancers	Ovary	ovary
15	chr6:11918200-11919800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr6:11918200-11919800	Flanking Active TSS	K562	blood
17	chr6:11918200-11919800	Enhancers	NH-A	brain
18	chr6:11918200-11920000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:11918200-11920200	Enhancers	Fetal Lung	lung
20	chr6:11918200-11920600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:11918200-11921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
26	chr6:11918400-11919800	Enhancers	Brain Germinal Matrix	brain
27	chr6:11918400-11922400	Enhancers	NHEK	skin
28	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:11918600-11920600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:11918600-11921400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:11919000-11921200	Weak transcription	Small Intestine	intestine
32	chr6:11919000-11922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:11919200-11920400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr6:11919200-11920400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:11919200-11920400	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:11919400-11920600	Weak transcription	Placenta	Placenta
37	chr6:11919400-11920600	Weak transcription	A549	lung
38	chr6:11919400-11920800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:11919400-11921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:11919400-11921200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:11919400-11921200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:11919400-11921200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:11919400-11921200	Weak transcription	Right Ventricle	heart
44	chr6:11919400-11922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:11919400-11922200	Enhancers	Hela-S3	cervix
46	chr6:11919400-11922200	Enhancers	NHDF-Ad	bronchial
47	chr6:11919400-11922200	Enhancers	NHLF	lung
48	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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