The 2.0 version of rSNPBase

Variant report

Variant rs55797398
Chromosome Location chr6:12039056-12039057
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12017800-12040200 Weak transcription Fetal Brain Male brain
2 chr6:12018400-12039600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr6:12018600-12049400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr6:12018600-12052000 Weak transcription Thymus Thymus
5 chr6:12020800-12039400 Weak transcription H9 Cell Line embryonic stem cell
6 chr6:12023200-12047800 Weak transcription Fetal Muscle Trunk muscle
7 chr6:12023600-12039200 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr6:12026000-12044800 Weak transcription NHDF-Ad bronchial
9 chr6:12029200-12045000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr6:12029800-12042800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr6:12032000-12039800 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr6:12032000-12044800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr6:12032000-12044800 Weak transcription NH-A brain
14 chr6:12032000-12047600 Weak transcription Fetal Stomach stomach
15 chr6:12032200-12039600 Weak transcription H1 Cell Line embryonic stem cell
16 chr6:12032200-12039600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr6:12032200-12039800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr6:12033600-12040000 Enhancers Primary T cells from cord blood blood
19 chr6:12034400-12039200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr6:12034400-12045000 Weak transcription HUVEC blood vessel
21 chr6:12034600-12044800 Weak transcription Hela-S3 cervix
22 chr6:12034600-12045000 Weak transcription A549 lung
23 chr6:12034800-12039600 Weak transcription Adipose Nuclei Adipose
24 chr6:12034800-12040000 Weak transcription Fetal Intestine Small intestine
25 chr6:12034800-12047600 Weak transcription Fetal Intestine Large intestine
26 chr6:12034800-12061000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr6:12035000-12039200 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr6:12035000-12039400 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr6:12035000-12039600 Weak transcription Psoas Muscle Psoas
30 chr6:12035000-12040000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr6:12035000-12049800 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr6:12035200-12039200 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr6:12035200-12039400 Weak transcription HSMM muscle
34 chr6:12035200-12039600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr6:12035200-12039600 Weak transcription Right Ventricle heart
36 chr6:12035200-12039800 Weak transcription Gastric stomach
37 chr6:12035200-12039800 Weak transcription Pancreas Pancrea
38 chr6:12035200-12039800 Weak transcription Spleen Spleen
39 chr6:12035200-12040000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr6:12035200-12040000 Weak transcription Brain Cingulate Gyrus brain
41 chr6:12035200-12040000 Weak transcription Esophagus oesophagus
42 chr6:12035200-12040000 Weak transcription Fetal Muscle Leg muscle
43 chr6:12035200-12040000 Weak transcription Left Ventricle heart
44 chr6:12035200-12041000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr6:12035200-12041800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr6:12035200-12044600 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr6:12035200-12044800 Weak transcription Brain Hippocampus Middle brain
48 chr6:12035200-12044800 Weak transcription Duodenum Mucosa Duodenum
49 chr6:12035200-12047800 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr6:12035200-12052200 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015