Variant report

Variant	rs17486782
Chromosome Location	chr6:11952072-11952073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11951766..11953426-chr6:11954045..11956144,3	K562	blood:
2	chr6:11951980..11954338-chr6:12006413..12008901,2	K562	blood:
3	chr6:11947667..11952733-chr6:12010159..12014739,6	K562	blood:
4	chr6:11945990..11949036-chr6:11950804..11953646,3	K562	blood:
5	chr6:11943808..11945567-chr6:11950046..11952634,2	K562	blood:
6	chr6:11947667..11952221-chr6:12010159..12014739,5	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16872057	0.94[AMR][1000 genomes]
rs16872190	1.00[ASN][1000 genomes]
rs17486670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17676319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676414	0.90[EUR][1000 genomes]
rs2024579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273100	1.00[ASN][1000 genomes]
rs55698720	1.00[ASN][1000 genomes]
rs55706944	1.00[ASN][1000 genomes]
rs55718735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760539	1.00[ASN][1000 genomes]
rs55797398	1.00[ASN][1000 genomes]
rs55819840	1.00[ASN][1000 genomes]
rs55839618	1.00[AFR][1000 genomes]
rs55875423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55911725	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55964029	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56050214	1.00[ASN][1000 genomes]
rs56087670	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56138551	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56204496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209525	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294425	1.00[ASN][1000 genomes]
rs56321224	1.00[ASN][1000 genomes]
rs56412238	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764416	1.00[ASN][1000 genomes]
rs57774273	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58026118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58086722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58221347	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58831065	1.00[ASN][1000 genomes]
rs59206097	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59592071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60200272	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60552066	1.00[ASN][1000 genomes]
rs61227873	1.00[ASN][1000 genomes]
rs62395405	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6458056	1.00[ASN][1000 genomes]
rs66530314	1.00[ASN][1000 genomes]
rs66614912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66708680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66720565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727286	1.00[ASN][1000 genomes]
rs66964129	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67170588	1.00[ASN][1000 genomes]
rs67757013	1.00[ASN][1000 genomes]
rs67843209	1.00[ASN][1000 genomes]
rs68009879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68019130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916070	1.00[ASN][1000 genomes]
rs72826009	1.00[ASN][1000 genomes]
rs72826011	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826025	1.00[ASN][1000 genomes]
rs72826027	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826092	1.00[ASN][1000 genomes]
rs742750	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs876829	1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11951600-11953600	Weak transcription	K562	blood
2	chr6:11952000-11953000	Enhancers	NHDF-Ad	bronchial
3	chr6:11952000-11954200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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