The 2.0 version of rSNPBase

Variant report

Variant rs55819840
Chromosome Location chr6:12033616-12033617
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12015400-12034000 Weak transcription Hela-S3 cervix
2 chr6:12017800-12034200 Weak transcription Fetal Kidney kidney
3 chr6:12017800-12035000 Weak transcription Brain Inferior Temporal Lobe brain
4 chr6:12017800-12040200 Weak transcription Fetal Brain Male brain
5 chr6:12018400-12039600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr6:12018600-12049400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr6:12018600-12052000 Weak transcription Thymus Thymus
8 chr6:12019000-12034200 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr6:12020800-12034200 Weak transcription Duodenum Mucosa Duodenum
10 chr6:12020800-12034600 Weak transcription Right Ventricle heart
11 chr6:12020800-12037400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr6:12020800-12039400 Weak transcription H9 Cell Line embryonic stem cell
13 chr6:12021800-12034200 Weak transcription Fetal Brain Female brain
14 chr6:12022000-12034000 Weak transcription A549 lung
15 chr6:12022000-12037200 Weak transcription Fetal Thymus thymus
16 chr6:12022000-12037600 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr6:12023200-12047800 Weak transcription Fetal Muscle Trunk muscle
18 chr6:12023600-12034200 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr6:12023600-12039200 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr6:12025200-12034200 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr6:12025400-12034200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr6:12025400-12034200 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr6:12025600-12034200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr6:12025800-12034600 Weak transcription Stomach Mucosa stomach
25 chr6:12026000-12034600 Weak transcription Rectal Smooth Muscle rectum
26 chr6:12026000-12034800 Weak transcription Aorta Aorta
27 chr6:12026000-12044800 Weak transcription NHDF-Ad bronchial
28 chr6:12026200-12034200 Weak transcription Ovary ovary
29 chr6:12028000-12034200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr6:12029200-12045000 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr6:12029800-12034600 Weak transcription Left Ventricle heart
32 chr6:12029800-12042800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr6:12030000-12034000 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr6:12030600-12033800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr6:12030600-12034000 Weak transcription Primary hematopoietic stem cells blood
36 chr6:12030600-12034200 Weak transcription Fetal Lung lung
37 chr6:12030600-12037000 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr6:12030600-12037400 Weak transcription Primary B cells from cord blood blood
39 chr6:12030800-12034000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr6:12030800-12034000 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr6:12030800-12034600 Weak transcription Brain Cingulate Gyrus brain
42 chr6:12031000-12034200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr6:12031400-12037200 Weak transcription Primary B cells from peripheral blood blood
44 chr6:12031600-12034600 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr6:12031600-12037000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr6:12031800-12034000 Weak transcription Muscle Satellite Cultured Cells --
47 chr6:12031800-12034200 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr6:12031800-12034600 Weak transcription Lung lung
49 chr6:12031800-12035000 Weak transcription NHLF lung
50 chr6:12032000-12033800 Weak transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015