The 2.0 version of rSNPBase

Variant report

Variant rs55760539
Chromosome Location chr6:12059563-12059564
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12034800-12061000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr6:12040200-12060800 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr6:12040400-12059600 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr6:12041000-12060800 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr6:12045600-12059800 Weak transcription Left Ventricle heart
6 chr6:12045600-12059800 Weak transcription Psoas Muscle Psoas
7 chr6:12045600-12061000 Weak transcription Fetal Thymus thymus
8 chr6:12045600-12061000 Weak transcription Pancreas Pancrea
9 chr6:12045600-12061200 Weak transcription Gastric stomach
10 chr6:12045600-12065800 Weak transcription Aorta Aorta
11 chr6:12045600-12066200 Weak transcription HSMM muscle
12 chr6:12045600-12066400 Weak transcription Hela-S3 cervix
13 chr6:12045800-12066000 Weak transcription HUVEC blood vessel
14 chr6:12046000-12060800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr6:12047800-12059800 Weak transcription H1 Cell Line embryonic stem cell
16 chr6:12048000-12060800 Weak transcription Fetal Intestine Small intestine
17 chr6:12048000-12061200 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr6:12048200-12060800 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr6:12048200-12062800 Weak transcription K562 blood
20 chr6:12048600-12060800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr6:12048600-12060800 Weak transcription Fetal Intestine Large intestine
22 chr6:12048600-12061000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr6:12048600-12061200 Weak transcription Fetal Stomach stomach
24 chr6:12050600-12065800 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr6:12050600-12066000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr6:12051200-12061000 Weak transcription Primary T cells fromperipheralblood blood
27 chr6:12051200-12061000 Weak transcription Lung lung
28 chr6:12052600-12060800 Weak transcription Thymus Thymus
29 chr6:12052600-12061000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr6:12053000-12060800 Weak transcription Rectal Smooth Muscle rectum
31 chr6:12053400-12060800 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr6:12054000-12060800 Weak transcription Primary hematopoietic stem cells blood
33 chr6:12054000-12061000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr6:12054200-12060600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr6:12055400-12061000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr6:12056200-12061200 Weak transcription H9 Cell Line embryonic stem cell
37 chr6:12056400-12060800 Weak transcription Brain Inferior Temporal Lobe brain
38 chr6:12057000-12060800 Enhancers Primary T helper cells PMA-I stimulated --
39 chr6:12058200-12060600 Weak transcription Duodenum Mucosa Duodenum
40 chr6:12058200-12060800 Enhancers Primary T helper cells fromperipheralblood blood
41 chr6:12058200-12060800 Enhancers Primary T regulatory cells fromperipheralblood blood
42 chr6:12058400-12060200 Enhancers Skeletal Muscle Male skeletal muscle
43 chr6:12058400-12060800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr6:12058600-12060200 Enhancers A549 lung
45 chr6:12058600-12060800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr6:12058600-12060800 Enhancers Monocytes-CD14+_RO01746 blood
47 chr6:12058600-12061600 Enhancers Fetal Heart heart
48 chr6:12058800-12059800 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr6:12058800-12060000 Enhancers Esophagus oesophagus
50 chr6:12058800-12060000 Enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015