Variant report

Variant	rs58026118
Chromosome Location	chr6:11940844-11940845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11937603..11940541-chr6:11940588..11943697,3	K562	blood:
2	chr6:11934884..11941785-chr6:12006305..12013263,12	K562	blood:
3	chr6:11940312..11942234-chr6:11949542..11951160,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs16872057	0.94[AMR][1000 genomes]
rs16872190	1.00[ASN][1000 genomes]
rs17486670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17486782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676414	0.90[EUR][1000 genomes]
rs2024579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273100	1.00[ASN][1000 genomes]
rs55698720	1.00[ASN][1000 genomes]
rs55706944	1.00[ASN][1000 genomes]
rs55718735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760539	1.00[ASN][1000 genomes]
rs55797398	1.00[ASN][1000 genomes]
rs55819840	1.00[ASN][1000 genomes]
rs55839618	1.00[AFR][1000 genomes]
rs55875423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55911725	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55964029	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56050214	1.00[ASN][1000 genomes]
rs56087670	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56138551	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56204496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209525	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294425	1.00[ASN][1000 genomes]
rs56321224	1.00[ASN][1000 genomes]
rs56412238	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764416	1.00[ASN][1000 genomes]
rs57774273	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58086722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58221347	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58831065	1.00[ASN][1000 genomes]
rs59206097	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59592071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60200272	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60552066	1.00[ASN][1000 genomes]
rs61227873	1.00[ASN][1000 genomes]
rs62395405	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6458056	1.00[ASN][1000 genomes]
rs66530314	1.00[ASN][1000 genomes]
rs66614912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66708680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66720565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727286	1.00[ASN][1000 genomes]
rs66964129	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67170588	1.00[ASN][1000 genomes]
rs67757013	1.00[ASN][1000 genomes]
rs67843209	1.00[ASN][1000 genomes]
rs68009879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68019130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916070	1.00[ASN][1000 genomes]
rs72826009	1.00[ASN][1000 genomes]
rs72826011	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826025	1.00[ASN][1000 genomes]
rs72826027	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826092	1.00[ASN][1000 genomes]
rs742750	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs876829	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519516	chr6:11938672-11942371	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11939200-11942800	Weak transcription	Liver	Liver
2	chr6:11939200-11943400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:11939200-11943400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:11939200-11943600	Weak transcription	Pancreas	Pancrea
5	chr6:11939800-11942400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:11940200-11942400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:11940800-11941200	Weak transcription	K562	blood

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