Variant report

Variant	rs62395405
Chromosome Location	chr6:11927294-11927295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11920056..11922933-chr6:11926115..11927726,3	K562	blood:
2	chr6:11925839..11928403-chr6:12007971..12010402,2	K562	blood:
3	chr6:11925920..11928166-chr6:11973706..11976576,2	K562	blood:

Variant related genes	Relation type
ENSG00000229896	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs16872057	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16872190	1.00[ASN][1000 genomes]
rs17486670	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17486782	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17676319	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2024579	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41273100	1.00[ASN][1000 genomes]
rs55698720	1.00[ASN][1000 genomes]
rs55706944	1.00[ASN][1000 genomes]
rs55718735	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55760539	1.00[ASN][1000 genomes]
rs55797398	1.00[ASN][1000 genomes]
rs55819840	1.00[ASN][1000 genomes]
rs55839618	1.00[AFR][1000 genomes]
rs55875423	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55911725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55964029	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56050214	1.00[ASN][1000 genomes]
rs56087670	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56115353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56138551	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56204496	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56209525	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56294425	1.00[ASN][1000 genomes]
rs56321224	1.00[ASN][1000 genomes]
rs56412238	1.00[ASN][1000 genomes]
rs56764416	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57774273	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58026118	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58086722	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58221347	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58831065	1.00[ASN][1000 genomes]
rs59206097	1.00[ASN][1000 genomes]
rs59592071	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60200272	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60552066	1.00[ASN][1000 genomes]
rs61227873	1.00[ASN][1000 genomes]
rs6458056	1.00[ASN][1000 genomes]
rs66530314	1.00[ASN][1000 genomes]
rs66614912	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66708680	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66720565	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66727286	1.00[ASN][1000 genomes]
rs66964129	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67170588	1.00[ASN][1000 genomes]
rs67757013	1.00[ASN][1000 genomes]
rs67843209	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68009879	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68019130	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6916070	1.00[ASN][1000 genomes]
rs72826009	1.00[ASN][1000 genomes]
rs72826011	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826025	1.00[ASN][1000 genomes]
rs72826027	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72826092	1.00[ASN][1000 genomes]
rs742750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876829	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:11921600-11938600	Weak transcription	Right Atrium	heart
5	chr6:11921800-11930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11923400-11929600	Weak transcription	Fetal Lung	lung
7	chr6:11924000-11929600	Weak transcription	K562	blood
8	chr6:11926400-11927400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:11926400-11927600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:11926400-11927800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:11926400-11927800	Weak transcription	Pancreas	Pancrea
12	chr6:11926400-11932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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