Variant report
| Variant | rs56764416 |
|---|---|
| Chromosome Location | chr6:11916574-11916575 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:11915689..11918284-chr6:11987739..11989572,2 | K562 | blood: | |
| 2 | chr6:11916050..11918300-chr6:11921352..11923216,2 | K562 | blood: | |
| 3 | chr6:11916020..11917550-chr6:11921352..11923792,2 | K562 | blood: | |
| 4 | chr6:11914819..11917032-chr6:11917286..11919137,2 | K562 | blood: | |
| 5 | chr6:11914759..11918485-chr6:12007071..12010914,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229896 | Chromatin interaction |
| ENSG00000095951 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:54)
| rs_ID | r2[population] |
|---|---|
| rs16872057 | 0.96[EUR][1000 genomes] |
| rs16872190 | 1.00[ASN][1000 genomes] |
| rs17486782 | 1.00[ASN][1000 genomes] |
| rs17676319 | 1.00[ASN][1000 genomes] |
| rs2024579 | 1.00[ASN][1000 genomes] |
| rs41273100 | 1.00[ASN][1000 genomes] |
| rs55698720 | 1.00[ASN][1000 genomes] |
| rs55706944 | 1.00[ASN][1000 genomes] |
| rs55718735 | 1.00[ASN][1000 genomes] |
| rs55760539 | 1.00[ASN][1000 genomes] |
| rs55797398 | 1.00[ASN][1000 genomes] |
| rs55819840 | 1.00[ASN][1000 genomes] |
| rs55875423 | 1.00[ASN][1000 genomes] |
| rs55911725 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55964029 | 1.00[ASN][1000 genomes] |
| rs56050214 | 1.00[ASN][1000 genomes] |
| rs56087670 | 1.00[ASN][1000 genomes] |
| rs56115353 | 1.00[ASN][1000 genomes] |
| rs56138551 | 1.00[ASN][1000 genomes] |
| rs56204496 | 1.00[ASN][1000 genomes] |
| rs56209525 | 1.00[ASN][1000 genomes] |
| rs56294425 | 1.00[ASN][1000 genomes] |
| rs56321224 | 1.00[ASN][1000 genomes] |
| rs56412238 | 1.00[ASN][1000 genomes] |
| rs57774273 | 1.00[ASN][1000 genomes] |
| rs58026118 | 1.00[ASN][1000 genomes] |
| rs58086722 | 1.00[ASN][1000 genomes] |
| rs58221347 | 1.00[ASN][1000 genomes] |
| rs58831065 | 1.00[ASN][1000 genomes] |
| rs59206097 | 1.00[ASN][1000 genomes] |
| rs59592071 | 1.00[ASN][1000 genomes] |
| rs60200272 | 1.00[ASN][1000 genomes] |
| rs60552066 | 1.00[ASN][1000 genomes] |
| rs61227873 | 1.00[ASN][1000 genomes] |
| rs62395405 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6458056 | 1.00[ASN][1000 genomes] |
| rs66530314 | 1.00[ASN][1000 genomes] |
| rs66614912 | 1.00[ASN][1000 genomes] |
| rs66708680 | 1.00[ASN][1000 genomes] |
| rs66720565 | 1.00[ASN][1000 genomes] |
| rs66727286 | 1.00[ASN][1000 genomes] |
| rs66964129 | 1.00[ASN][1000 genomes] |
| rs67170588 | 1.00[ASN][1000 genomes] |
| rs67757013 | 1.00[ASN][1000 genomes] |
| rs67843209 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68009879 | 1.00[ASN][1000 genomes] |
| rs68019130 | 1.00[ASN][1000 genomes] |
| rs6916070 | 1.00[ASN][1000 genomes] |
| rs72826009 | 1.00[ASN][1000 genomes] |
| rs72826011 | 1.00[ASN][1000 genomes] |
| rs72826025 | 1.00[ASN][1000 genomes] |
| rs72826027 | 1.00[ASN][1000 genomes] |
| rs742750 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs876829 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:11910600-11918000 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr6:11915400-11918000 | Weak transcription | K562 | blood |
| 3 | chr6:11916000-11919200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 4 | chr6:11916400-11916600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
