Variant report

Variant	rs61227873
Chromosome Location	chr6:12001206-12001207
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11996235..12002680-chr6:12007180..12010064,7	MCF-7	breast:
2	chr6:12000762..12002782-chr6:12011047..12014052,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs16872190	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486782	1.00[ASN][1000 genomes]
rs17676319	1.00[ASN][1000 genomes]
rs2024579	1.00[ASN][1000 genomes]
rs41273100	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55698720	1.00[ASN][1000 genomes]
rs55706944	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718735	1.00[ASN][1000 genomes]
rs55760539	1.00[ASN][1000 genomes]
rs55797398	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55819840	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839618	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55875423	1.00[ASN][1000 genomes]
rs55911725	1.00[ASN][1000 genomes]
rs55964029	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56050214	1.00[ASN][1000 genomes]
rs56087670	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115353	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138551	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56204496	1.00[ASN][1000 genomes]
rs56209525	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56294425	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56321224	1.00[ASN][1000 genomes]
rs56412238	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764416	1.00[ASN][1000 genomes]
rs57774273	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58026118	1.00[ASN][1000 genomes]
rs58086722	1.00[ASN][1000 genomes]
rs58221347	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58831065	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59206097	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59592071	1.00[ASN][1000 genomes]
rs60200272	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60552066	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395405	1.00[ASN][1000 genomes]
rs6458056	1.00[ASN][1000 genomes]
rs66530314	1.00[ASN][1000 genomes]
rs66614912	1.00[ASN][1000 genomes]
rs66708680	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66720565	1.00[ASN][1000 genomes]
rs66727286	1.00[ASN][1000 genomes]
rs66964129	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67170588	1.00[ASN][1000 genomes]
rs67757013	1.00[ASN][1000 genomes]
rs67843209	1.00[ASN][1000 genomes]
rs68009879	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68019130	1.00[ASN][1000 genomes]
rs6916070	1.00[ASN][1000 genomes]
rs72826009	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826011	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826025	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826027	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826092	1.00[ASN][1000 genomes]
rs72828105	1.00[ASN][1000 genomes]
rs742750	1.00[ASN][1000 genomes]
rs876829	1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11990800-12007200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:11995600-12001400	Weak transcription	K562	blood
3	chr6:11995600-12007800	Weak transcription	Hela-S3	cervix
4	chr6:11998400-12007800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:11999200-12002000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:11999400-12001600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:11999400-12002200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:11999600-12001400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:11999600-12001400	Enhancers	Fetal Lung	lung
10	chr6:11999600-12008400	Weak transcription	Psoas Muscle	Psoas
11	chr6:12000000-12001400	Weak transcription	Osteobl	bone
12	chr6:12000000-12001600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:12000000-12002400	Enhancers	Fetal Heart	heart
14	chr6:12000600-12001400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:12000600-12002000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:12000800-12001400	Enhancers	HepG2	liver
17	chr6:12000800-12001600	Weak transcription	HSMMtube	muscle
18	chr6:12001000-12001600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:12001000-12001800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:12001200-12001600	Active TSS	Liver	Liver
21	chr6:12001200-12002200	Enhancers	Adipose Nuclei	Adipose
22	chr6:12001200-12002200	Enhancers	Fetal Brain Female	brain

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