Variant report

Variant	rs55839618
Chromosome Location	chr6:12028975-12028976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12024355..12026993-chr6:12027535..12029252,2	MCF-7	breast:
2	chr6:12011542..12013253-chr6:12028201..12030306,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16872190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17486670	1.00[AFR][1000 genomes]
rs17486782	1.00[AFR][1000 genomes]
rs17676319	0.91[AFR][1000 genomes]
rs2024579	0.91[AFR][1000 genomes]
rs41273100	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55706944	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55718735	1.00[AFR][1000 genomes]
rs55797398	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55819840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55875423	0.91[AFR][1000 genomes]
rs55911725	0.91[AFR][1000 genomes]
rs55964029	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56087670	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56115353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56138551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56204496	0.91[AFR][1000 genomes]
rs56294425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56412238	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57774273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58026118	1.00[AFR][1000 genomes]
rs58086722	0.91[AFR][1000 genomes]
rs58221347	0.89[AMR][1000 genomes]
rs58831065	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59206097	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59592071	1.00[AFR][1000 genomes]
rs60200272	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60552066	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61227873	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62395405	1.00[AFR][1000 genomes]
rs66614912	0.91[AFR][1000 genomes]
rs66708680	0.91[AFR][1000 genomes]
rs66720565	1.00[AFR][1000 genomes]
rs66964129	0.91[AFR][1000 genomes]
rs68009879	0.91[AFR][1000 genomes]
rs68019130	1.00[AFR][1000 genomes]
rs72826009	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72826027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs742750	0.91[AFR][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12013800-12033600	Weak transcription	Psoas Muscle	Psoas
2	chr6:12014000-12031800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12014400-12030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:12014600-12032000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:12015400-12029200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:12015400-12034000	Weak transcription	Hela-S3	cervix
7	chr6:12017800-12029400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:12017800-12034200	Weak transcription	Fetal Kidney	kidney
9	chr6:12017800-12035000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:12017800-12040200	Weak transcription	Fetal Brain Male	brain
11	chr6:12018400-12039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:12018600-12031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:12018600-12049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:12018600-12052000	Weak transcription	Thymus	Thymus
15	chr6:12018800-12030200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:12019000-12034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:12020800-12031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:12020800-12031400	Weak transcription	Esophagus	oesophagus
19	chr6:12020800-12031400	Weak transcription	Lung	lung
20	chr6:12020800-12031600	Weak transcription	Placenta	Placenta
21	chr6:12020800-12034200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:12020800-12034600	Weak transcription	Right Ventricle	heart
23	chr6:12020800-12037400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:12020800-12039400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:12021000-12031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:12021800-12031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:12021800-12033600	Weak transcription	Spleen	Spleen
28	chr6:12021800-12034200	Weak transcription	Fetal Brain Female	brain
29	chr6:12022000-12029400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:12022000-12031800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:12022000-12034000	Weak transcription	A549	lung
32	chr6:12022000-12037200	Weak transcription	Fetal Thymus	thymus
33	chr6:12022000-12037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:12022400-12029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:12022400-12029400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:12023200-12031400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:12023200-12031400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:12023200-12047800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:12023400-12029400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:12023400-12031200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:12023600-12034200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr6:12023600-12039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:12024800-12033600	ZNF genes & repeats	GM12878-XiMat	blood
44	chr6:12025200-12030400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:12025200-12034200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:12025400-12031200	Weak transcription	Fetal Stomach	stomach
47	chr6:12025400-12031400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:12025400-12031600	Weak transcription	Gastric	stomach
49	chr6:12025400-12033400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:12025400-12034200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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