The 2.0 version of rSNPBase

Variant report

Variant rs66530314
Chromosome Location chr6:12060808-12060809
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12034800-12061000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr6:12045600-12061000 Weak transcription Fetal Thymus thymus
3 chr6:12045600-12061000 Weak transcription Pancreas Pancrea
4 chr6:12045600-12061200 Weak transcription Gastric stomach
5 chr6:12045600-12065800 Weak transcription Aorta Aorta
6 chr6:12045600-12066200 Weak transcription HSMM muscle
7 chr6:12045600-12066400 Weak transcription Hela-S3 cervix
8 chr6:12045800-12066000 Weak transcription HUVEC blood vessel
9 chr6:12048000-12061200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr6:12048200-12062800 Weak transcription K562 blood
11 chr6:12048600-12061000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr6:12048600-12061200 Weak transcription Fetal Stomach stomach
13 chr6:12050600-12065800 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr6:12050600-12066000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr6:12051200-12061000 Weak transcription Primary T cells fromperipheralblood blood
16 chr6:12051200-12061000 Weak transcription Lung lung
17 chr6:12052600-12061000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr6:12054000-12061000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr6:12055400-12061000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr6:12056200-12061200 Weak transcription H9 Cell Line embryonic stem cell
21 chr6:12058600-12061600 Enhancers Fetal Heart heart
22 chr6:12058800-12061000 Weak transcription NHLF lung
23 chr6:12058800-12061200 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr6:12059000-12061000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
25 chr6:12059000-12061000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr6:12059000-12061000 Weak transcription Ovary ovary
27 chr6:12059000-12061200 Weak transcription Small Intestine intestine
28 chr6:12059000-12064800 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr6:12059200-12061000 Weak transcription Adipose Nuclei Adipose
30 chr6:12059200-12061000 Weak transcription Colonic Mucosa Colon
31 chr6:12059200-12061200 Weak transcription Liver Liver
32 chr6:12059400-12064000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr6:12059600-12061000 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr6:12059800-12061000 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr6:12059800-12061400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr6:12060000-12061000 Weak transcription Esophagus oesophagus
37 chr6:12060000-12061000 Weak transcription Left Ventricle heart
38 chr6:12060000-12061200 Weak transcription Colon Smooth Muscle Colon
39 chr6:12060000-12061200 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr6:12060000-12063600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
41 chr6:12060000-12065600 Weak transcription Fetal Muscle Leg muscle
42 chr6:12060000-12067800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr6:12060200-12061000 Weak transcription Spleen Spleen
44 chr6:12060200-12063800 Weak transcription Psoas Muscle Psoas
45 chr6:12060200-12065600 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr6:12060600-12061000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr6:12060600-12061000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
48 chr6:12060600-12061000 Flanking Active TSS GM12878-XiMat blood
49 chr6:12060600-12061200 Enhancers iPS-20b Cell Line embryonic stem cell
50 chr6:12060600-12061200 Enhancers Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015