Variant report

Variant	rs16914334
Chromosome Location	chr8:51071027-51071028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10100515	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs10107442	0.85[AMR][1000 genomes]
rs16914099	0.85[AMR][1000 genomes]
rs16914125	0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs16914130	0.85[AMR][1000 genomes]
rs16914355	0.86[YRI][hapmap]
rs16914414	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16914433	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28418948	0.85[AMR][1000 genomes]
rs28438566	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28468445	0.85[AMR][1000 genomes]
rs28553511	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28557047	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28664922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28784070	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56234780	0.85[AMR][1000 genomes]
rs59814912	0.85[AMR][1000 genomes]
rs61279830	0.85[AMR][1000 genomes]
rs73569349	0.85[AMR][1000 genomes]
rs73569350	0.85[AMR][1000 genomes]
rs73569361	0.85[AMR][1000 genomes]
rs73569366	0.85[AMR][1000 genomes]
rs73569372	0.85[AMR][1000 genomes]
rs73569374	0.85[AMR][1000 genomes]
rs73569385	0.85[AMR][1000 genomes]
rs73573585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677826	0.85[AMR][1000 genomes]
rs73677828	0.85[AMR][1000 genomes]
rs7822276	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1027998	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv539607	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1027984	chr8:51060895-51098808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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