Variant report

Variant	rs17075612
Chromosome Location	chr3:43407966-43407967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10510734	1.00[EUR][1000 genomes]
rs1105263	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17075523	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17075726	1.00[CEU][hapmap]
rs1848069	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60173579	1.00[EUR][1000 genomes]
rs60410086	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61676031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441770	1.00[EUR][1000 genomes]
rs6763493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862031	1.00[EUR][1000 genomes]
rs72862060	1.00[EUR][1000 genomes]
rs72863608	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863615	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863618	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863622	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863656	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831272	1.00[EUR][1000 genomes]
rs7613430	1.00[EUR][1000 genomes]
rs7623284	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:43402400-43413400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:43402600-43408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:43402600-43413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:43403000-43412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:43403600-43408600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:43403800-43414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:43404000-43409400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:43404200-43409200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:43404200-43411600	Weak transcription	Brain Substantia Nigra	brain
15	chr3:43404200-43413400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:43404600-43409400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:43404600-43409600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:43404600-43414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:43404800-43408000	Weak transcription	Left Ventricle	heart
20	chr3:43404800-43412000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:43405000-43408400	Strong transcription	Fetal Intestine Small	intestine
22	chr3:43405000-43414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:43405000-43419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:43405200-43408000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:43405400-43408000	Weak transcription	NHDF-Ad	bronchial
26	chr3:43405400-43411000	Weak transcription	Pancreas	Pancrea
27	chr3:43405400-43414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:43405600-43408400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:43405600-43409000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:43405600-43414800	Weak transcription	Osteobl	bone
31	chr3:43405800-43408000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:43405800-43408200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:43405800-43415000	Weak transcription	HSMM	muscle
34	chr3:43406000-43408000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:43406000-43408600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:43406200-43408000	Strong transcription	Fetal Brain Female	brain
37	chr3:43406200-43408200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:43406200-43408400	Genic enhancers	Lung	lung
39	chr3:43406200-43408800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:43406400-43408200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:43406400-43408200	Genic enhancers	Placenta	Placenta
42	chr3:43406400-43408200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr3:43406400-43408200	Strong transcription	NHLF	lung
44	chr3:43406400-43408400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr3:43406400-43408600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:43406600-43408000	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr3:43406600-43408400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:43406600-43409000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
49	chr3:43406600-43409200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr3:43406800-43408000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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