Variant report

Variant	rs7623284
Chromosome Location	chr3:43406102-43406103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43403132..43406596-chr3:43407199..43410614,3	K562	blood:
2	chr3:43404577..43407359-chr3:43418115..43420347,2	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510734	1.00[EUR][1000 genomes]
rs1105263	1.00[EUR][1000 genomes]
rs17075523	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075612	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1848069	1.00[EUR][1000 genomes]
rs60173579	1.00[EUR][1000 genomes]
rs60410086	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61676031	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441770	1.00[EUR][1000 genomes]
rs6763493	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862031	1.00[EUR][1000 genomes]
rs72862060	1.00[EUR][1000 genomes]
rs72863608	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863615	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863618	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863622	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863647	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863656	1.00[EUR][1000 genomes]
rs73831272	1.00[EUR][1000 genomes]
rs7613430	1.00[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:43390600-43407200	Weak transcription	Gastric	stomach
3	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
4	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:43395800-43406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:43396800-43407000	Weak transcription	Aorta	Aorta
7	chr3:43396800-43407200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:43397000-43406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
10	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:43402000-43407000	Enhancers	Fetal Muscle Leg	muscle
12	chr3:43402400-43413400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:43402600-43406400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:43402600-43407000	Enhancers	Fetal Muscle Trunk	muscle
15	chr3:43402600-43408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:43402600-43413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:43402800-43406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:43402800-43407200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:43403000-43412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:43403200-43407200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:43403400-43406200	Weak transcription	Fetal Brain Female	brain
23	chr3:43403600-43408600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:43403800-43414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:43404000-43406400	Enhancers	Ovary	ovary
26	chr3:43404000-43409400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:43404200-43409200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:43404200-43411600	Weak transcription	Brain Substantia Nigra	brain
29	chr3:43404200-43413400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:43404400-43406200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:43404400-43406200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:43404400-43406400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:43404400-43406600	Enhancers	Adipose Nuclei	Adipose
34	chr3:43404600-43406400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr3:43404600-43406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:43404600-43406400	Weak transcription	Fetal Intestine Large	intestine
37	chr3:43404600-43409400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:43404600-43409600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:43404600-43414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:43404800-43406200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr3:43404800-43406600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:43404800-43407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr3:43404800-43408000	Weak transcription	Left Ventricle	heart
44	chr3:43404800-43412000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:43405000-43407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:43405000-43407800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:43405000-43408400	Strong transcription	Fetal Intestine Small	intestine
48	chr3:43405000-43414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:43405000-43419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:43405200-43406400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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