Variant report

Variant	rs60410086
Chromosome Location	chr3:43376876-43376877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510734	1.00[EUR][1000 genomes]
rs1105263	1.00[EUR][1000 genomes]
rs17075523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075612	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1848069	1.00[EUR][1000 genomes]
rs60173579	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61676031	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6441770	1.00[EUR][1000 genomes]
rs6763493	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72862031	1.00[EUR][1000 genomes]
rs72862060	1.00[EUR][1000 genomes]
rs72863608	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863618	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863622	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863647	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863656	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831272	1.00[EUR][1000 genomes]
rs7613430	1.00[EUR][1000 genomes]
rs7623284	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43346000-43377000	Weak transcription	K562	blood
3	chr3:43348400-43378800	Weak transcription	Hela-S3	cervix
4	chr3:43361200-43377800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:43368200-43377000	Weak transcription	Ovary	ovary
6	chr3:43368200-43377200	Weak transcription	Gastric	stomach
7	chr3:43368200-43377600	Weak transcription	Colonic Mucosa	Colon
8	chr3:43368400-43379200	Weak transcription	Stomach Mucosa	stomach
9	chr3:43368400-43379400	Weak transcription	Fetal Brain Male	brain
10	chr3:43369000-43377200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:43369000-43378600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:43369400-43379200	Weak transcription	Small Intestine	intestine
13	chr3:43369600-43377200	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:43370200-43377200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:43370400-43377000	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:43370400-43377600	Weak transcription	Right Ventricle	heart
17	chr3:43372400-43377000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:43372400-43377200	Weak transcription	NHLF	lung
19	chr3:43372600-43377200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:43372800-43379200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:43373000-43377000	Weak transcription	Psoas Muscle	Psoas
22	chr3:43373000-43377200	Weak transcription	Brain Angular Gyrus	brain
23	chr3:43373200-43379200	Weak transcription	HSMMtube	muscle
24	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:43373600-43377000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr3:43373600-43377000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:43373600-43377000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:43373600-43377200	Strong transcription	Liver	Liver
29	chr3:43373800-43377000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:43373800-43377200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:43373800-43383400	Strong transcription	HUVEC	blood vessel
32	chr3:43374000-43377000	Strong transcription	Duodenum Mucosa	Duodenum
33	chr3:43374000-43377200	Strong transcription	Fetal Lung	lung
34	chr3:43374000-43383400	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:43374200-43377000	Strong transcription	Adipose Nuclei	Adipose
36	chr3:43374200-43377800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr3:43374400-43377200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:43374400-43385000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:43374600-43379200	Strong transcription	Left Ventricle	heart
40	chr3:43375000-43377200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:43375200-43378400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:43375200-43381000	ZNF genes & repeats	Dnd41	blood
43	chr3:43375200-43382000	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr3:43375400-43379000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:43375600-43381000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr3:43375600-43382000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr3:43375800-43377800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
48	chr3:43375800-43380800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr3:43375800-43381000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:43375800-43381400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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